Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1490 ATGTTAAAGGTGGCGAATCCAAGAGACAAAGTTATTAAAAGGGAACTCAATGATCCCACATTGTCGTCAACTGAAATGCTATTTCCTTTTCCTGGTATGAATAGAGATAGAGAAATGTCTGCTATGATCTCTGCTTTGACCCATATCGTCTCAGGAGATGTTCCAAACCAAAGCACTGCAGTTCAACTTGAACCAAATATGATCAACATGTCTTCTTCTCCTAATTCTTCATCTAGTTATGTTACTAGTTCTTCTCTCAAAAGAACTAGGGATGATGACAAATTCGTCTCTAATCAGACATCAAACACAATATTGATATCATCAAATGCAGAAAGTTCGAGAAATAGGACAACAACAGCAAGAGTAACAAGGGAAATGGGAAATGCTGTGTATGAATATAGAAGAACGGAGAGTGTGGCAAGAGAAGGAGAAGAGAAGAGAAAATACAGAGGAGTGAGACAGAGACCGTGGGGAAAATGGGCTGCAGAGATAAGAGATCCTTTCAAAGCAGCAAGAGTATGGTTAGGAACATTTGAAACAGCTGAAGCAGCTGCTAGAGCATATGATGAAGCTGCTCTTCGTTTTAGAGGAAACAAAGCAAAACTTAATTTTCCTGAAAATGTTACTCTTCGTCACCCTCCTCCAACAACATCCACTCAGTGGAATATTTCGAATATGCCGACTATGCCGAGTTCGGTTGTTTCGATAACAACTTCGACTGACCCTGTTGTTCATACTCGACCTTTTTCTTATTCACAACCTTCAACAAATTTTTATGATCCTTTTCAGTTTTCGGGTATTCCAGCTAGGAATGTTTACGATGATAATGTGATTATGAGTTCTACTATGGCTTCTCATCTTCAATCTTCTTCGTCGTCGATGTCACCGGCTTCTTCCTTGTCATCTTCTTCTTCTGCATTTTCTTCTTCTATGCAGACCAATGCTTCAGCTTCCTCGTTTTATTCTACAAAGTTTCCACCGTGGTCAGCCTCTGATCACAACTCTTCTTCCTCAAGATGA 1020 0.398 MLKVANPRDKVIKRELNDPTLSSTEMLFPFPGMNRDREMSAMISALTHIVSGDVPNQSTAVQLEPNMINMSSSPNSSSSYVTSSSLKRTRDDDKFVSNQTSNTILISSNAESSRNRTTTARVTREMGNAVYEYRRTESVAREGEEKRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALRFRGNKAKLNFPENVTLRHPPPTTSTQWNISNMPTMPSSVVSITTSTDPVVHTRPFSYSQPSTNFYDPFQFSGIPARNVYDDNVIMSSTMASHLQSSSSSMSPASSLSSSSSAFSSSMQTNASASSFYSTKFPPWSASDHNSSSSR* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1490 339 ProSiteProfiles AP2/ERF domain profile. 148 205 IPR001471 GO:0003700|GO:0006355
Psa5g1490 339 SUPERFAMILY DNA-binding domain 148 206 IPR016177 GO:0003677
Psa5g1490 339 SMART rav1_2 148 211 IPR001471 GO:0003700|GO:0006355
Psa5g1490 339 CDD AP2 148 207 IPR001471 GO:0003700|GO:0006355
Psa5g1490 339 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 34 335 - -
Psa5g1490 339 PRINTS Ethylene responsive element binding protein signature 149 160 IPR001471 GO:0003700|GO:0006355
Psa5g1490 339 PRINTS Ethylene responsive element binding protein signature 171 187 IPR001471 GO:0003700|GO:0006355
Psa5g1490 339 PANTHER DNA-BINDING DOMAIN 34 335 IPR044808 GO:0003700|GO:0009873
Psa5g1490 339 Pfam AP2 domain 148 197 IPR001471 GO:0003700|GO:0006355
Psa5g1490 339 Gene3D AP2/ERF domain 147 207 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1490 Psa-Chr5 114394434 114396232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1490 146 233 AP2-EREBP Transcription Factor Family AT5G61890 68.539 4.52e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa5g1490 AP2 2.5e-14 CL0081