Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1483 ATGTATGCTACTACTTCCTTTGTTTCACCACTTCTCCATGACCTTGAGATTTTCCACTCTAGAAGGATGTTACTTCACTCTCCAATTAACCAACCATCAAATCTAGCTAACTCTCCAATTTCAACAAATATCCATGATTCAAGTAAAGAATCATCCTATCTTGGAGATGGTAATGTTGATGCAAATGTTGTTATGGTACTCTCTGTCCTATTATGTGCTCTTATTTGTTCACTTTGTTTGAACTCAATCATAAGGTGTGCGTTAAGGTGCTCTAGTTTAGTTGTCACAAGTGGTGGCGGAGGTGGTGGTCGTCACGCTAACACTCCAGCTCTAGCGACAAACACTGGAATCAAGAAAAAGGCTCTCAAGACATTCACTACGGTGAGTTATTCGGCCGAGTTGAATCTGCCGAGTTTGGACTCAGAGTGTGTGATATGTTTGTCAGAGTTCGTTAACGGGGATAAGGTGCGTCTTTTGCCTAAGTGTAACCACGGATTTCATGTTCGCTGTATTGACAAATGGCTAAGTTCGCATTCGTCGTGTCCTAAATGTAGACAATGTCTTATTGAGACATGTAAAAAAATTGTTGGATCACAAAGTAGTTCATCTCAATTACCACAACCTATGTTGTATCCGGTGCCGGAAACAATTGTAACTATAGTGCCACTTGAACATGAAGGTTTGGTGAGAAACTATAGGGAGGTTAGCTAA 711 0.4065 MYATTSFVSPLLHDLEIFHSRRMLLHSPINQPSNLANSPISTNIHDSSKESSYLGDGNVDANVVMVLSVLLCALICSLCLNSIIRCALRCSSLVVTSGGGGGGRHANTPALATNTGIKKKALKTFTTVSYSAELNLPSLDSECVICLSEFVNGDKVRLLPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIETCKKIVGSQSSSSQLPQPMLYPVPETIVTIVPLEHEGLVRNYREVS* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1483 236 Pfam Ring finger domain 142 185 IPR001841 -
Psa5g1483 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 189 IPR013083 -
Psa5g1483 236 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 235 - -
Psa5g1483 236 CDD RING-H2_EL5_like 142 185 - -
Psa5g1483 236 PANTHER RING-H2 FINGER PROTEIN ATL78 1 235 IPR044602 GO:0016567|GO:0016740
Psa5g1483 236 SMART ring_2 143 184 IPR001841 -
Psa5g1483 236 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Psa5g1483 236 SUPERFAMILY RING/U-box 122 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1483 Psa-Chr5 113857005 113858447 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1483 22 189 C3H Transcription Factor Family AT3G10910 44.706 1.45e-40 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1483 K19040 - gmx:100807227 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g1105 7 82703716 82704607 Psa5g1483 5 113857005 113858447 PCT