Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1480 ATGGTTAGAGAAAAAGCTATCGATCTATGCATCACTGTTCCCACCTTCTTCAAATGCCCTATCTCACTCGACGTTATGAAATCTCCCGTTAGCCTCTGCACCGGTGTCACCTACGACCGTTCCAGTATCCAACGATGGTTAGACGATGGCAACAACACCTGTCCTGCGACCATGCAGATTCTTAAAACTAAGGATTTTGTTCCTAACCGAACTCTACATAGTCTCATCCAGATCTGGACCGACTCGGTTCATCGCCGGGTCGAACCGCCTTTTCTATCTTCGGTTTCTTCTAAAGATCAAATCCTTCAAGCTATCACTGATTTATCCGCCTCTCCCGGTCTAAACCGTCTAAACCGGCTCGGCTTAATCACAAAAGTAGTTCGGTTCGGTCAGGATTCCGATCAGAACCGAGCTTTTCTCGCGAAATTAAACGGTTTTGTTTCTCTGATGGTTACTTCCCTCGACAATGTTGACGGGAGCGTTGAGTTTCTCGAACAGGTTTTAACGGCGTTAGGTTTAGTTCTAGAAAAAATCGAAGATCGCGAGGGTTTTAAAAACCATGTGTTGAAGGTGAAGGGGAAGAACAATAAATGTTTAGATTCTATGCTTCTTGTTTTACGAAGAGGAAGTAACAATTCAAGAATCGCAACCGCTAGGGTTTTGAAATTCATAGCTCTTGACGGTGAATCACAGATTCTAATAGCTGAGAACGAAGCTTTGATAACTGAATTATTGAATTTATCGAAGCCAGAGAAAGATCCGAAGCTGATTGAAAACTGTTTATCGTGCTTAGTAGCGATCTCGCAACCGAAAAGGAACAAGGTGAAGCTGGTGAAAGTTGGAGGAATGAAAACGTTTTCGAGGTTACTAACAGAAGCTAATACGAGCGTGAAAGTGGTGGAGAAGGCGTTAAAGCTGGTGGAAAGTGCGTCGACGACGAGTGAGGGAAGAAAGGAGATGTGTGAGGACGCGGCGTGCGTGGCGGCGATACTGAATAAAGTTCTGAAGGTATCGAACGTGGCGACGGGACACGCGGTGACGATACTGTGGAGTGTTTGTTATCTGTTTCGGGATCAGAAAGCGCAAGAAGCGGTTACTCAGGCGAATGGGTTAACGAAGATACTGTTGCTGATACAGGGTTATTGTTCGCCTCAAGTTCGCCAAATGTGTACGGATTTGCTACAGATTTTTAGGGTTAACTCTAAATCGTGTCTTTCTTCTTATGAAACCAAGACATCACATATCATGCCATTTTGA 1257 0.4447 MVREKAIDLCITVPTFFKCPISLDVMKSPVSLCTGVTYDRSSIQRWLDDGNNTCPATMQILKTKDFVPNRTLHSLIQIWTDSVHRRVEPPFLSSVSSKDQILQAITDLSASPGLNRLNRLGLITKVVRFGQDSDQNRAFLAKLNGFVSLMVTSLDNVDGSVEFLEQVLTALGLVLEKIEDREGFKNHVLKVKGKNNKCLDSMLLVLRRGSNNSRIATARVLKFIALDGESQILIAENEALITELLNLSKPEKDPKLIENCLSCLVAISQPKRNKVKLVKVGGMKTFSRLLTEANTSVKVVEKALKLVESASTTSEGRKEMCEDAACVAAILNKVLKVSNVATGHAVTILWSVCYLFRDQKAQEAVTQANGLTKILLLIQGYCSPQVRQMCTDLLQIFRVNSKSCLSSYETKTSHIMPF* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1480 418 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 281 325 IPR000225 GO:0005515
Psa5g1480 418 SUPERFAMILY RING/U-box 11 81 - -
Psa5g1480 418 CDD RING-Ubox_PUB 17 59 IPR045210 -
Psa5g1480 418 PANTHER WDSAM1 PROTEIN 8 418 IPR045185 GO:0061630
Psa5g1480 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 82 IPR013083 -
Psa5g1480 418 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 8 418 - -
Psa5g1480 418 ProSiteProfiles U-box domain profile. 12 86 IPR003613 GO:0004842|GO:0016567
Psa5g1480 418 SMART Ubox_2 16 79 IPR003613 GO:0004842|GO:0016567
Psa5g1480 418 Gene3D - 83 409 IPR011989 -
Psa5g1480 418 SUPERFAMILY ARM repeat 101 400 IPR016024 -
Psa5g1480 418 Pfam U-box domain 13 81 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1480 Psa-Chr5 113746120 113748371 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1480 8 418 U-box Gene Family AT5G64660 51.896 1.94e-138 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1480 - - gmx:100799627 542.732