LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa5g1471	ATGAGTTTGGCGGACACGGATTGCTCCGAGGAAGGTTCGGTCATTCTTGAGCCTCCAGATCCTGATATCATTGAAATTGATCCTACTTGTCGTTACCTTAGGTATAAAGAAGTAATTGGCAAAGGAGCTTTCAAGACTGTCTATAAGGCATTTGATGAAATCACCGGGCTTGAAGTTGCGTGGAGCCAAGTTCGGATTGACGAGGTATTACAATCGCCGGGCGATCTAGAAAGGCTGTATTCAGAAGTGCATCTTTTGAGATCTTTGAAGCACAGTAACATTGTAAGGTTCTACAATTCATGGATTGATGACAAGCAAAGGAATGTTAACATGATAACTGAGTTGTTCACCTCAGGGAGCCTGAGACAGTACCGAAAGAAACACAAGAAGGTTGACATGAAAGCTGTTAAAGGATGGGCGAGACAGATTTTGATGGGTTTAGTTTACCTCCACAATCATAGCCCGCCTATTATACATAGGGATCTCAAGTGCGATAATATATTTATAAATGGTCACCAAGGAGTAGTTAAGATCGGAGATTTGGGGTTGGCAACTCTCTTGAAGCACAATAATGCCAAGAGTGTAATTGGAACTCCGGAGTTTATGGCGCCTGAATTGTATGATGAAAATTATAATGAATTGGCTGACATATATTCTTTTGGGATGTGCATGCTGGAGTTGGCTACTTCCGAGTATCCTTACCGAGAATGTAGAAACTCTGCTCAGATATACAAGAAAGTTTCATCTGGCATAAAGCCGGTTTCTCTTTCTAAAATCAAAGATCCGGAAATAAAATCATTTATTGAGAAATGTCTTGTCCCGGCATCTCGAAGACTGTCGGCAAAGGAGCTTCTTATGGACCCTTTTCTTGAAGTGAATGGTTCAATAAAGAGTCGCCCTCTTCCGTTACCAGATATTGTTCTACCTAAATTCGGAGGCTTTGTAAATCGCTGTCTGATGTCAGAAGGTCCTGCTAGTGCACGAATTGGATCCATATCAATGGATCTTGGTGATACCAATGAGCAACCATTGGTCACTGTATTTTATAATTCTGTTGATGATGCACCACCTTCTCCATGTATAGAGATACGAAGGTTGGTGGGAGGTGATAGATTTTTTCTCAAAGGTGAAGAAAATGACATGAATTCCGTGTCATTAGTTCTAAGGATAACTAATCAGGGTGGGCGAGCAAGAAATATCCATTTCATATTCTACCTCGATAGTGATACAGCCATCTCGGTGTCAAAAGAAATGGTAGAGCAACTTGAACTTGCCGAGCACAATGTTGTTTTCATCGCCGAGTTGATTGATCTGTTACTGACGACATTGGTTCCTGATTGGAAGCCTTGTGTAGCTATTGATCACTTAATTTCTCCAAATGGTAAACGAGCTTATCTGAGCCAACAGAAACAAGATCCGCTCTTGGCAAAATACAAACAAAACTCAGTAGATTCTAGCCAAATTGTGGCAGAATATGCAGGTCCCTCAACCTCGAATGAGAGATTGACCGAAAAAGAAAACATCGATAATGTGATTTTTGAAGATGTTTTATCCCATGCAACCAACACAAATGATTTATATTCTGCAACATCATACACTTCAGCAACATCTGACATTAATGATAAGAATTTTTCCACAGTTTCATTCATGTCTGCTAGGTCAGGATTCACAGACTTTAACTTACTTACAGTGAATGGATGGAGTCAATCCTCGCATGCATCTGAGATTGGGATATCCTCTGATAAAAAGAGCAAGTTTTCGAGCATGGAAAGCAACAATTACTCATTCTATGAAACTGAGGATGAGTTAAGAATAGAGTTAGAGAAAGTTGAACGTCAATATCAAGAGACAATGAAAGATTTAACCAAAAGAAGATATGAGGCCATCATGGAGATCAGAAAGAGGCTGTCCAACAAAAATACAATCATTGAATAA	1935	0.399	MSLADTDCSEEGSVILEPPDPDIIEIDPTCRYLRYKEVIGKGAFKTVYKAFDEITGLEVAWSQVRIDEVLQSPGDLERLYSEVHLLRSLKHSNIVRFYNSWIDDKQRNVNMITELFTSGSLRQYRKKHKKVDMKAVKGWARQILMGLVYLHNHSPPIIHRDLKCDNIFINGHQGVVKIGDLGLATLLKHNNAKSVIGTPEFMAPELYDENYNELADIYSFGMCMLELATSEYPYRECRNSAQIYKKVSSGIKPVSLSKIKDPEIKSFIEKCLVPASRRLSAKELLMDPFLEVNGSIKSRPLPLPDIVLPKFGGFVNRCLMSEGPASARIGSISMDLGDTNEQPLVTVFYNSVDDAPPSPCIEIRRLVGGDRFFLKGEENDMNSVSLVLRITNQGGRARNIHFIFYLDSDTAISVSKEMVEQLELAEHNVVFIAELIDLLLTTLVPDWKPCVAIDHLISPNGKRAYLSQQKQDPLLAKYKQNSVDSSQIVAEYAGPSTSNERLTEKENIDNVIFEDVLSHATNTNDLYSATSYTSATSDINDKNFSTVSFMSARSGFTDFNLLTVNGWSQSSHASEIGISSDKKSKFSSMESNNYSFYETEDELRIELEKVERQYQETMKDLTKRRYEAIMEIRKRLSNKNTIIE*	645

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Psa5g1471	644	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK6-RELATED	4	641	-	-
Psa5g1471	644	CDD	STKc_WNK	31	290	-	-
Psa5g1471	644	SMART	serkin_6	33	290	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Psa5g1471	644	SUPERFAMILY	Protein kinase-like (PK-like)	34	291	IPR011009	-
Psa5g1471	644	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED	4	641	-	-
Psa5g1471	644	Gene3D	-	382	450	-	-
Psa5g1471	644	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	157	169	IPR008271	GO:0004672\|GO:0006468
Psa5g1471	644	Coils	Coil	600	624	-	-
Psa5g1471	644	ProSiteProfiles	Protein kinase domain profile.	33	290	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Psa5g1471	644	Pfam	Protein kinase domain	35	290	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa5g1471	Psa-Chr5	113509842	113512509	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa5g1471	133	459	MAP Kinase Kinase Kinase	AT1G49160	69.419	1.30e-163	474

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	WNK_NRBP	Psa5g1471		Pkinase	3.5e-52	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa5g1471	K08867		-	gmx:121175054	905.59

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa5g1471	5	113509842	113512509	Psa5g1471	5	113509842	113512509	ECH
	Psa7g1101	7	82339051	82342713	Psa5g1471	5	113509842	113512509	PCT

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