Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1471 ATGAGTTTGGCGGACACGGATTGCTCCGAGGAAGGTTCGGTCATTCTTGAGCCTCCAGATCCTGATATCATTGAAATTGATCCTACTTGTCGTTACCTTAGGTATAAAGAAGTAATTGGCAAAGGAGCTTTCAAGACTGTCTATAAGGCATTTGATGAAATCACCGGGCTTGAAGTTGCGTGGAGCCAAGTTCGGATTGACGAGGTATTACAATCGCCGGGCGATCTAGAAAGGCTGTATTCAGAAGTGCATCTTTTGAGATCTTTGAAGCACAGTAACATTGTAAGGTTCTACAATTCATGGATTGATGACAAGCAAAGGAATGTTAACATGATAACTGAGTTGTTCACCTCAGGGAGCCTGAGACAGTACCGAAAGAAACACAAGAAGGTTGACATGAAAGCTGTTAAAGGATGGGCGAGACAGATTTTGATGGGTTTAGTTTACCTCCACAATCATAGCCCGCCTATTATACATAGGGATCTCAAGTGCGATAATATATTTATAAATGGTCACCAAGGAGTAGTTAAGATCGGAGATTTGGGGTTGGCAACTCTCTTGAAGCACAATAATGCCAAGAGTGTAATTGGAACTCCGGAGTTTATGGCGCCTGAATTGTATGATGAAAATTATAATGAATTGGCTGACATATATTCTTTTGGGATGTGCATGCTGGAGTTGGCTACTTCCGAGTATCCTTACCGAGAATGTAGAAACTCTGCTCAGATATACAAGAAAGTTTCATCTGGCATAAAGCCGGTTTCTCTTTCTAAAATCAAAGATCCGGAAATAAAATCATTTATTGAGAAATGTCTTGTCCCGGCATCTCGAAGACTGTCGGCAAAGGAGCTTCTTATGGACCCTTTTCTTGAAGTGAATGGTTCAATAAAGAGTCGCCCTCTTCCGTTACCAGATATTGTTCTACCTAAATTCGGAGGCTTTGTAAATCGCTGTCTGATGTCAGAAGGTCCTGCTAGTGCACGAATTGGATCCATATCAATGGATCTTGGTGATACCAATGAGCAACCATTGGTCACTGTATTTTATAATTCTGTTGATGATGCACCACCTTCTCCATGTATAGAGATACGAAGGTTGGTGGGAGGTGATAGATTTTTTCTCAAAGGTGAAGAAAATGACATGAATTCCGTGTCATTAGTTCTAAGGATAACTAATCAGGGTGGGCGAGCAAGAAATATCCATTTCATATTCTACCTCGATAGTGATACAGCCATCTCGGTGTCAAAAGAAATGGTAGAGCAACTTGAACTTGCCGAGCACAATGTTGTTTTCATCGCCGAGTTGATTGATCTGTTACTGACGACATTGGTTCCTGATTGGAAGCCTTGTGTAGCTATTGATCACTTAATTTCTCCAAATGGTAAACGAGCTTATCTGAGCCAACAGAAACAAGATCCGCTCTTGGCAAAATACAAACAAAACTCAGTAGATTCTAGCCAAATTGTGGCAGAATATGCAGGTCCCTCAACCTCGAATGAGAGATTGACCGAAAAAGAAAACATCGATAATGTGATTTTTGAAGATGTTTTATCCCATGCAACCAACACAAATGATTTATATTCTGCAACATCATACACTTCAGCAACATCTGACATTAATGATAAGAATTTTTCCACAGTTTCATTCATGTCTGCTAGGTCAGGATTCACAGACTTTAACTTACTTACAGTGAATGGATGGAGTCAATCCTCGCATGCATCTGAGATTGGGATATCCTCTGATAAAAAGAGCAAGTTTTCGAGCATGGAAAGCAACAATTACTCATTCTATGAAACTGAGGATGAGTTAAGAATAGAGTTAGAGAAAGTTGAACGTCAATATCAAGAGACAATGAAAGATTTAACCAAAAGAAGATATGAGGCCATCATGGAGATCAGAAAGAGGCTGTCCAACAAAAATACAATCATTGAATAA 1935 0.399 MSLADTDCSEEGSVILEPPDPDIIEIDPTCRYLRYKEVIGKGAFKTVYKAFDEITGLEVAWSQVRIDEVLQSPGDLERLYSEVHLLRSLKHSNIVRFYNSWIDDKQRNVNMITELFTSGSLRQYRKKHKKVDMKAVKGWARQILMGLVYLHNHSPPIIHRDLKCDNIFINGHQGVVKIGDLGLATLLKHNNAKSVIGTPEFMAPELYDENYNELADIYSFGMCMLELATSEYPYRECRNSAQIYKKVSSGIKPVSLSKIKDPEIKSFIEKCLVPASRRLSAKELLMDPFLEVNGSIKSRPLPLPDIVLPKFGGFVNRCLMSEGPASARIGSISMDLGDTNEQPLVTVFYNSVDDAPPSPCIEIRRLVGGDRFFLKGEENDMNSVSLVLRITNQGGRARNIHFIFYLDSDTAISVSKEMVEQLELAEHNVVFIAELIDLLLTTLVPDWKPCVAIDHLISPNGKRAYLSQQKQDPLLAKYKQNSVDSSQIVAEYAGPSTSNERLTEKENIDNVIFEDVLSHATNTNDLYSATSYTSATSDINDKNFSTVSFMSARSGFTDFNLLTVNGWSQSSHASEIGISSDKKSKFSSMESNNYSFYETEDELRIELEKVERQYQETMKDLTKRRYEAIMEIRKRLSNKNTIIE* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1471 644 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK6-RELATED 4 641 - -
Psa5g1471 644 CDD STKc_WNK 31 290 - -
Psa5g1471 644 SMART serkin_6 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g1471 644 SUPERFAMILY Protein kinase-like (PK-like) 34 291 IPR011009 -
Psa5g1471 644 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 4 641 - -
Psa5g1471 644 Gene3D - 382 450 - -
Psa5g1471 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Psa5g1471 644 Coils Coil 600 624 - -
Psa5g1471 644 ProSiteProfiles Protein kinase domain profile. 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g1471 644 Pfam Protein kinase domain 35 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g1471 644 Gene3D Phosphorylase Kinase; domain 1 19 114 - -
Psa5g1471 644 Gene3D Transferase(Phosphotransferase) domain 1 116 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1471 Psa-Chr5 113509842 113512509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1471 133 459 MAP Kinase Kinase Kinase AT1G49160 69.419 1.30e-163 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Psa5g1471 Pkinase 3.5e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1471 K08867 - gmx:121175054 905.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1471 5 113509842 113512509 Psa5g1471 5 113509842 113512509 ECH
Psa7g1101 7 82339051 82342713 Psa5g1471 5 113509842 113512509 PCT