Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1459 ATGAACCATCTTCTCCGAAAGAATTCTCTGTTCTTCACCTCATCATGTTCATCATCGCAATCTCGCACGCTTCTGGTTCGATTTCAACTATGCGAGTTCTCTTCTTCTCACACTCCGTATTCTCACTGGAAGCGTCACGACGAAGAGTCACGCAGTGTTAGGGTTTCAGTGTGGTGGGATTTTGAGAACTGCAACGTGCCTATTGGTGTTAACGTCTCCAAAGTAGCACCTGCTATCACTGACGCTGTTAGAGCTAATGGAATTAAAGGCCCTGTTCATATTACCGCTTTCGGCGATGTTTATCAGCTTTCAAGACCCAATCAGGAGGCACTTGCTTTCACTGGGATTCATCTTACACACATTCCCAACGGTGGAAAGAATAGTGCTGATAGATCTCTTCTTGTTGATCTTATGTATTGGGTTTCCCAAAATCCTCCGCCCGCACATCTCTTTCTGATATCTGGTGATAGGGACTTTGCTGGCATATTGCACCGATTAAGAATGAATAACTATAATATCTTGCTTGCAAGTCCTGGAAAGGCTCCTGATGTTCTCCGCAGTGCAGCAACTATAATGTGGCAGTGGGCATCTTTGCTCAAGGGAGAAGATCTAACTGGAAAACATTTCAACCACCCTCCCGATGGTCAGTTTGGTTCTTGGTATGGAAACTCTAAAGTGCCTCTTGAAAACCCCTTTTCAGCGGCTGAGCAGTTAACATCTTCACAAAATGTACACATTATGGAAATCAATGAACCCTCCTCAGACTTAAAGATAGGTGGAGGAGTTCCAAAGTCAGTTATAAGAAAGATTAAGGATATATTGAGTTTACATCCAAAAGGCATCGCCATTTCAGAACTCCGTGCAGAGCTGATAAAATGTGATGTGTCTTTGGGTAAAAGCATATTTGGATATAAAAGGCTTTCCCGCTTTCTATCATCAATACCACATGTACAACTCCGGCATTTAAGAGATGGTAACTATTGTGTGTATTTGATCCCCTCAGAGTACCACGAACCTTCTGAAAGCAGCACTGCTTTATCAACGGTATCTGCTGTTAAGAAAGAGGAGACGGGCTGTACAACAATTCCAAAGCTACAAAGCAACGATAAAGACATTAATAGAGACGTGGATAGGACTCTTTCAACGTCTTCATTGGATGAAAGGATCATTGAGGATGATTCAAAATCATCCCAATCTATCTCTTTACAAGGAATACCTATCAAGGAAGACGTGTCACATAAATCATTTGGCTATACAACAACTCCAATGCTACACAGTGAGGATAAGGACGTGGATAGAGACGTACGTAGGACTCTCCCGATGTCTTCAGTGCATGAAAGGATCACTGAGGATGGTTTAAAATCACTCCAATCTATCCCTTCACAAGGAAAACCTATTGAAGAAGATGTGTCACATAAGTCATCTGTAGGCAGTGAGAAGGTTCTGGATGTGTCTAATGCACAATTGTCAGAGAGTCAACTTTCTTCAAAGGACAATGATGTTTACAAAAGTGAGATTGGTTCCTTTAAAGTGAGATCTATAAAGTTTTCTGATGATGAAATTGTTAGGTCTGAGGACGTAAGTCCAAAAGTTCTTGAAAAATATACCACTTCAGGGAAACTCTCTGCTGGTACTGATCACACAATGATGGAAAACAATGATTTAGTAAATTGTGAATCTGGAAAATCTATGGCAAAGAACAAACACGAGGATCAACCTAAAAAGGAGGTTGATGATCACAGCCCATATTCTTCAGCAGTTGATGACTCTTTGGTTGACAAAAGACCCGGTGTTCATCCTGAAACATACAGCAAAAGATCAACTTTCTTTAGCTGGATTAAAAGTTGGTGGCCATTTCAGAAAAGAAATGTAAAGGCTGATGATTCTACTGCTTATCAGAACAAGGTGACTAGTAATTTAGAGAATTCCAAGTTATCCGAACTGGACAAGACTGCAAGTAATCTTGAAGAACCCAAGCCATTAGAACAACAGCACTATGTCAGTCATTCTGGAAAGCACGGGGATTCCAAGTTACCTGAATTAGACCATACTGCCAGTAGTCTTGAAAAGCCTAAGCCATTAGAAGCACACCAGGATGTCATCCATTCCGGAAAGCCTGAGTTATTTTCTAGTGGTTCCTTTTGGAATGACATGGAATCTTTTGTTTTCACCCCGAAAGGATCACTTCTTATTTCCCAGTCTAGAAGCAGGGAGGATTTGGCTCATAAACTACAAAAGCATGGACCCATGACTCTCAAGTCTTTTGCTGAAAATGATATTTTTCAATTGGTGGAACTGTTGATAGCAGAAAAAAAATGGCTGGAGGAGTGCCCCTCACAAGCATTTCCTTTTAGGCTAACTCAATCAGTTCGGAAGAGCATGCTGATGGGCCAGTCTAATGGTACAAGTGGTTTGAGATCTCTGTTTCTAAGTAGAACATCGCAGTCCAACATGCAAAAGTCATTTGAACATGAAGGGGAGAAACACTCTCAGAGTACTCAGCAAACTGGAGTTTCCAGACCTGCAACTGAAACAAAATATACTGAGAAGTCTAGAAATGATATATTACAAGATTGTCAGAATCTGGTATCTGATGTATTGAGGGAACACCCAGAGGGATATAATATAGGCTGTTTTCGAAAACAATTTGCTGATAAATATGGCTATCACCTCGACATCAAAAAGCTTGGTTATCAGAAGATGGCATACCTGATACAGATAATGCCTGGGGTTAAATTAGAATCTACTTACATTTACCCTTCTACTCCTGCAGTTTGTGCTTCTGACTCAGACACTTCTATCCTCAAAACTCGAGCAACCAATGCCAGTCATGAAAACTTCAACTCATATAATGAATTATCTGATACAGCCCCAAAAGAGTATAACACAGAATCTCCTTGGGAGGAGTTAGGTCCTGTTTCTCTTAAAAGTCCTAGTCAGAATGATCTGGAATCAATTTTAACTCAAAAAGCCATCGAACTGAATACACATTACGAACCCATTGTCTCAGATTCTGAGTTATCTGAATCTGAAGGAGATAACTCTTGTTTAACTCAATCAGGAGATCAAGTAAAGCCAAAATATGATGAGCAAGACAGTTCTTTTTGGCAAGCTCTGGATTCCTGGCATAGCAGTAAGGAAGAAGAGAATAGTGTCAAGAAATCTGAAAACATTGATGTCTTGGGCAATTCTCTGCTTGACATCTTAAATTCAGCCCCAGACCCAAAACAGGGTATCCACGGTAACGTTTCCAACAAAGAAAAGCAAAGATCTCATAAGTATTCATTTGTTGTTGACCCAGCCTCACCTGACAAAGACAAGTTTATTGGTGGGATATTAGATGGTTTGAAGAAAGAGGATGAGCCCAAGATGCATAACTGA 3381 0.4061 MNHLLRKNSLFFTSSCSSSQSRTLLVRFQLCEFSSSHTPYSHWKRHDEESRSVRVSVWWDFENCNVPIGVNVSKVAPAITDAVRANGIKGPVHITAFGDVYQLSRPNQEALAFTGIHLTHIPNGGKNSADRSLLVDLMYWVSQNPPPAHLFLISGDRDFAGILHRLRMNNYNILLASPGKAPDVLRSAATIMWQWASLLKGEDLTGKHFNHPPDGQFGSWYGNSKVPLENPFSAAEQLTSSQNVHIMEINEPSSDLKIGGGVPKSVIRKIKDILSLHPKGIAISELRAELIKCDVSLGKSIFGYKRLSRFLSSIPHVQLRHLRDGNYCVYLIPSEYHEPSESSTALSTVSAVKKEETGCTTIPKLQSNDKDINRDVDRTLSTSSLDERIIEDDSKSSQSISLQGIPIKEDVSHKSFGYTTTPMLHSEDKDVDRDVRRTLPMSSVHERITEDGLKSLQSIPSQGKPIEEDVSHKSSVGSEKVLDVSNAQLSESQLSSKDNDVYKSEIGSFKVRSIKFSDDEIVRSEDVSPKVLEKYTTSGKLSAGTDHTMMENNDLVNCESGKSMAKNKHEDQPKKEVDDHSPYSSAVDDSLVDKRPGVHPETYSKRSTFFSWIKSWWPFQKRNVKADDSTAYQNKVTSNLENSKLSELDKTASNLEEPKPLEQQHYVSHSGKHGDSKLPELDHTASSLEKPKPLEAHQDVIHSGKPELFSSGSFWNDMESFVFTPKGSLLISQSRSREDLAHKLQKHGPMTLKSFAENDIFQLVELLIAEKKWLEECPSQAFPFRLTQSVRKSMLMGQSNGTSGLRSLFLSRTSQSNMQKSFEHEGEKHSQSTQQTGVSRPATETKYTEKSRNDILQDCQNLVSDVLREHPEGYNIGCFRKQFADKYGYHLDIKKLGYQKMAYLIQIMPGVKLESTYIYPSTPAVCASDSDTSILKTRATNASHENFNSYNELSDTAPKEYNTESPWEELGPVSLKSPSQNDLESILTQKAIELNTHYEPIVSDSELSESEGDNSCLTQSGDQVKPKYDEQDSSFWQALDSWHSSKEEENSVKKSENIDVLGNSLLDILNSAPDPKQGIHGNVSNKEKQRSHKYSFVVDPASPDKDKFIGGILDGLKKEDEPKMHN* 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1459 1126 PANTHER EMB|CAB71880.1 12 1066 - -
Psa5g1459 1126 MobiDBLite consensus disorder prediction 1004 1024 - -
Psa5g1459 1126 Gene3D - 46 196 - -
Psa5g1459 1126 Pfam NYN domain 54 189 IPR021139 GO:0004540
Psa5g1459 1126 ProSiteProfiles OST-type HTH domain profile. 855 929 IPR025605 -
Psa5g1459 1126 MobiDBLite consensus disorder prediction 819 850 - -
Psa5g1459 1126 MobiDBLite consensus disorder prediction 442 478 - -
Psa5g1459 1126 CDD LOTUS 856 911 - -
Psa5g1459 1126 MobiDBLite consensus disorder prediction 563 593 - -
Psa5g1459 1126 MobiDBLite consensus disorder prediction 563 583 - -
Psa5g1459 1126 Pfam OST-HTH/LOTUS domain 264 327 IPR025605 -
Psa5g1459 1126 Pfam OST-HTH/LOTUS domain 862 914 IPR025605 -
Psa5g1459 1126 Gene3D - 850 917 IPR041966 -
Psa5g1459 1126 Gene3D - 262 337 IPR041966 -
Psa5g1459 1126 ProSiteProfiles OST-type HTH domain profile. 262 333 IPR025605 -
Psa5g1459 1126 PANTHER LIMKAIN B LKAP 12 1066 IPR024768 GO:0005777|GO:0010468|GO:1903231
Psa5g1459 1126 CDD LOTUS 263 331 - -
Psa5g1459 1126 CDD PIN_limkain_b1_N_like 54 178 - -
Psa5g1459 1126 MobiDBLite consensus disorder prediction 1072 1100 - -
Psa5g1459 1126 MobiDBLite consensus disorder prediction 1004 1030 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1459 Psa-Chr5 112683711 112689021 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1459 53 201 C2H2 Transcription Factor Family AT5G61190 45.638 1.66e-37 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1459 - - mtr:MTR_3g095410 1508.43