Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1438 ATGAACGAAGCTCAAACTGAAATCACAATTCCTCACTTGTTTAGATGCCCCATAAGTCTTGATTTGTTGGAAGATCCAGTGACTTTAACCACTGGGCAAACCTATGATAGATCAAGCATAGAGAAATGGATTTCCGCAGGTAATTTCACATGTCCTGTAACAATGCAGAAGCTTCATGATTTATCTTTTGTTCCTAATCACACTCTTCGCCATTTGATTAATCAATGGCTTCAGCTTGGTTCACAATTTCATCACCCTTGTAATAATAACATCTCTGCAACCATAGATTATTTAGCTACAATAAAACACACCCTTGAATCTCATGATTCATCTATAGAAACCAAGTTGAAAGCACTTGAGAAAATCAGTGTTCTTTCTGATGAGTACTGTTCTTTCAGAAAATCTTGCTTCCAACAACTTAGTTTCTTAGCTTTACTTTTGGAACTTGTTTTTGGTTTATCAGATTCACAACTCTCAGAGAATTATTACATGGAATTCATGGAGTTAGCACTTTCTTGCATTGTTAAATTGTTGCCTATTGTAAATTTGGAGCCTCTAAATATCATCAAAGATGAATCAAAGTTGAAAAAGTTCATATTTTTATTTGAAAAAGGAACTAGTTCAATGAAGACTAGTTTGTGTCTTGTTATAGATTACTCAACAACAGCAACACAAACAGAACAAGTTTGTGAAATACTAGGAAACTCACAAAAACTAGTCCATGAAATTGTTCAAGTTGTTGTTAACAAAAATTGTGATAATCTTTCTGAGGCTGCAATTAAGGCCTTATCAGCATTATGTTCATTGGAATCAAACAAAGAGAGTCTAGTGAAAGGAGGAGCAATAGATGGAATCATAACATATATTTCAAGATGTGATACAACAAGAGACAAGAATTTGGCTCCACTTGCAATGACAACAATGATGAAACTTTTGGTGTTGGAGAGTGGTAAAGAGGCATTGGTGAATCATGTGAATGGTATTGAAACATTGGTGAAGATGGTTTTTAAGGTATGTAATCAAGAGTGTAGTGAGAGTGCTGTTGGGATACTTTCAATTGTTTGTAGTGATTTTGGGAGTGCTAGAGAGGTAGCTATTGGAGCTGGTGTTTTGAGTCAGTTGTTGTTTCTTCTGCAGAGTCAGTGTGGTACTAAAACTAAAACTAAGGCAAGAATGTTGCTTAAGTTGTTGAGATCAAAGTGGACTGAGGAATCAATGCATTAG 1224 0.3521 MNEAQTEITIPHLFRCPISLDLLEDPVTLTTGQTYDRSSIEKWISAGNFTCPVTMQKLHDLSFVPNHTLRHLINQWLQLGSQFHHPCNNNISATIDYLATIKHTLESHDSSIETKLKALEKISVLSDEYCSFRKSCFQQLSFLALLLELVFGLSDSQLSENYYMEFMELALSCIVKLLPIVNLEPLNIIKDESKLKKFIFLFEKGTSSMKTSLCLVIDYSTTATQTEQVCEILGNSQKLVHEIVQVVVNKNCDNLSEAAIKALSALCSLESNKESLVKGGAIDGIITYISRCDTTRDKNLAPLAMTTMMKLLVLESGKEALVNHVNGIETLVKMVFKVCNQECSESAVGILSIVCSDFGSAREVAIGAGVLSQLLFLLQSQCGTKTKTKARMLLKLLRSKWTEESMH* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1438 407 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Psa5g1438 407 PANTHER WDSAM1 PROTEIN 9 400 IPR045185 GO:0061630
Psa5g1438 407 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Psa5g1438 407 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Psa5g1438 407 Gene3D - 89 406 IPR011989 -
Psa5g1438 407 SUPERFAMILY RING/U-box 5 78 - -
Psa5g1438 407 CDD RING-Ubox_PUB 14 56 IPR045210 -
Psa5g1438 407 PANTHER OS02G0542800 PROTEIN 9 400 - -
Psa5g1438 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Psa5g1438 407 SUPERFAMILY ARM repeat 228 397 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1438 Psa-Chr5 111387183 111389153 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1438 8 403 U-box Gene Family AT3G19380 31.529 1.55e-47 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1438 - - gmx:100815247 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1438 5 111387183 111389153 Psa5g1438 5 111387183 111389153 ECH