Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1435 ATGGGAGATACTGTTAACCTTCCTCCTGGGTTTGTTTTCTCTCCATCAGATGAAGAACTTATCCTTCACTTTCTATATTCTAAGGCTTCTCATCTTATACCATCTCACTCAAACTTCATCCCTCATCTTGATCTCTCTCTACTTCTTCCTTGGGAATTAAATGGTAAGGCTATGTGTGGTGGAAATGATGATGACCAATACTATTTTTTCACCAAACTGAAAAAGGAAAATAGATCCACTCAAAATGGTTTTTGGAAGGAAATTGGTGTGACAGAACCAATATTTTCAGGTACTGATAAAAAAGTAGGAATGAAGAAGTACCTAGTATTCAACATTGCAGAAGGTGCTGAAACTAGTTGGGTAATGCAAGAATATCATATTTCCTCCTCTGTGCTTGATAATGTTGGTGAAAATTGGAGCGAGTGGGTATTATGCAAGGTTTATGAAGTTGAAAAGAATATGTATTCTGAACAAGGTGTGAGTTATTGTTACAGTGATGATGATCGTGAGAGTAGTGGAACAGAACTTTCATGGCAAGACCAAGTTTTTCTGTCTTTGGATTTGGACATTGACGTGGAAGGAATTACCATGAACCAGTATTAG 603 0.3715 MGDTVNLPPGFVFSPSDEELILHFLYSKASHLIPSHSNFIPHLDLSLLLPWELNGKAMCGGNDDDQYYFFTKLKKENRSTQNGFWKEIGVTEPIFSGTDKKVGMKKYLVFNIAEGAETSWVMQEYHISSSVLDNVGENWSEWVLCKVYEVEKNMYSEQGVSYCYSDDDRESSGTELSWQDQVFLSLDLDIDVEGITMNQY* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1435 200 Pfam No apical meristem (NAM) protein 8 127 IPR003441 GO:0003677|GO:0006355
Psa5g1435 200 PANTHER NAC TRANSCRIPTION FACTOR 56 4 191 - -
Psa5g1435 200 Gene3D NAC domain 16 155 IPR036093 GO:0003677|GO:0006355
Psa5g1435 200 ProSiteProfiles NAC domain profile. 7 150 IPR003441 GO:0003677|GO:0006355
Psa5g1435 200 SUPERFAMILY NAC domain 4 148 IPR036093 GO:0003677|GO:0006355
Psa5g1435 200 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 4 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1435 Psa-Chr5 111304492 111305992 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1435 1 149 NAC Transcription Factor Family AT1G61110 34.463 1.99e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa5g1435 NAM 1.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1435 - - gmx:100170711 228.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1435 5 111304492 111305992 Psa5g1435 5 111304492 111305992 ECH