Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1424 ATGGCTCCGGCGACCTCATCGCCTTCATCTCAGAAGCTCACGAGCTTCATCCACCGCACGCATGCACCGCACCACATTCGGAAAAAGACATTTGACTCGCCGCCGGTCAAGAAGTACAGGTCAATGGATGATATAATGGCAAGGGCGAAGTACGCGGTGGTGGAAAAGGAGGATTACGGTAGCCTCATGTGCGAGCAATGTGGCACCGGTGAGCAACCGGAGGAGCTGCTATTGTGCGACAAATGTGACAAAGGATTCCATATGAAATGTGTGAGGCCGATTGTTGTGAGAATTCCGATTGGTTCCTGGATTTGCCCTAAGTGTTCGGGGGTGAAGAAAGTGAAAAAGTTCACGCAAAGGAGAATACTTGATTTCTTTGGGCTTCCAAGGGATTTACCTGATTTCAGACGGAATAATTCTGCTTCTCGGGATGCTATGAGGCGGCGGAGACGTCCAAAACCGCTGGTCTTACAGAAGAAAAGGAGAAGGTTACTGCCCTTTGTTCCTACTGTAGATCCAGCCAGGAGATTGAAACAAATGGCCTCCCTAGCTTCTGCATTAACAGCACTGAATATTAAATTCAGTAATAGCCTGACCTACTCTCCAGGAATGGCTCCCCAAGAAGCGAATCAGTCCACCTTTGAAAATGGTGGAATGCAGAATCTTAATAAGGAAGACACAAAAACCTTAGAGCGCTGCATAACTATGACCAAACGAGGCAAATTCCCACCATTAATGGTGGTTTTTGATTCATGTCAAGGCTATACCGTGGAGGCTGATGGCCCTATAAAAGACATGACATTTATTGCTGAATACACCGGGGATGTGGATTTTATCAAGAACAGAGAAACTGATGATTGTGACAGCATGATGACGCTGCTTCTTTCAGGAAACCCTGCTACCAGTCTTGTTGCCTGTGCTGATAAACGTGGAAACATTGCTCGCTTTATCAGTGGCATCAACAATCATACTCAGGACGGTAAGAAGAAGCAGAACTGTAAATGTGTGAGATACAATGTTAATGATGAATCGCGGGTCTTTTTGATTGCTACCCGAGATATTTCCAAGGGGGAGAGGCTTTACTATGATTATAATGGTTATGAGAACCAATACCCAACTCATCATTTTGTCTGA 1134 0.4559 MAPATSSPSSQKLTSFIHRTHAPHHIRKKTFDSPPVKKYRSMDDIMARAKYAVVEKEDYGSLMCEQCGTGEQPEELLLCDKCDKGFHMKCVRPIVVRIPIGSWICPKCSGVKKVKKFTQRRILDFFGLPRDLPDFRRNNSASRDAMRRRRRPKPLVLQKKRRRLLPFVPTVDPARRLKQMASLASALTALNIKFSNSLTYSPGMAPQEANQSTFENGGMQNLNKEDTKTLERCITMTKRGKFPPLMVVFDSCQGYTVEADGPIKDMTFIAEYTGDVDFIKNRETDDCDSMMTLLLSGNPATSLVACADKRGNIARFISGINNHTQDGKKKQNCKCVRYNVNDESRVFLIATRDISKGERLYYDYNGYENQYPTHHFV* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1424 377 ProSiteProfiles SET domain profile. 243 365 IPR001214 GO:0005515
Psa5g1424 377 SUPERFAMILY FYVE/PHD zinc finger 34 109 IPR011011 -
Psa5g1424 377 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 18 375 - -
Psa5g1424 377 CDD PHD_RSF1 63 108 - -
Psa5g1424 377 ProSitePatterns Zinc finger PHD-type signature. 64 108 IPR019786 -
Psa5g1424 377 CDD SET_ATXR5_6-like 240 377 - -
Psa5g1424 377 Gene3D SET domain 149 377 IPR046341 -
Psa5g1424 377 Pfam SET domain 220 365 IPR001214 GO:0005515
Psa5g1424 377 Pfam PHD-finger 63 109 IPR019787 -
Psa5g1424 377 SUPERFAMILY SET domain 234 365 IPR046341 -
Psa5g1424 377 SMART PHD_3 63 109 IPR001965 -
Psa5g1424 377 PANTHER HISTONE ACETYLTRANSFERASE 18 375 - -
Psa5g1424 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 122 IPR013083 -
Psa5g1424 377 ProSiteProfiles Zinc finger PHD-type profile. 61 111 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1424 Psa-Chr5 111046539 111050531 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1424 35 129 C2H2 Transcription Factor Family AT3G01460 33.663 4.21e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa5g1424 SET 3.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1424 K24406 - gmx:100785817 531.561