Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1418 ATGAACAAAACCAACACACGAAAGCGTCCGGCGCCGCCGTCGCAACAACCACCAACAAAACAGGCACTAGCACAGGAAGATGAGTTCGTCGACGAAGACGTATTCCTGGACGAAAGCCTCCTCTCCGAAGACGATGACTCCGCAATCCTCCGTGACATGGAACAACGCCAAGCCCTAGCTGCTCGTCTCTCCAAGTGGACCCGTCCTCCCCTCTCCCAGGACTATATCTCTCAATCTTGTAGCATTCTTTTTCAGCAGCTAGAGATTGATTATGTAATTGGAGAGAGTCATAAAGAATTGCTACCAAACTCGTCTGGACCTGCTGCCATAATTAGAATATTTGGAGTGACAAAGGAAGGACACAGTGTTTGCTGCAAGGTTCACGGGTTTGAACCATATTTCTACATCAGCTGTCCTCCTGGAATGGGACCAGATGATATCTCCCATTTTCATCAAATTCTTGAGGCTAGGATGAGAGAAGCCAATAGAAACAACAATGTAGGAAAATTTGTTCGTCGTGTTGAAATGGTGCAGAGAAGGAGCATTATGTACTATCAACAATTAAAATCTCATCCCTTTCTCAAAATTGTTGTTGCACTCCCAACGATGGTTGCTAGCTGCCGTGGTATTCTTGATAGAGGTATTCAGCTTGATGGTCTTGGCATGAAAAGCTTCATGACTTATGAAAGCAATGTACTTTTTGCTCTTCGTTTCATGATTGATTGCAGCATAGTTGGGGGAAATTGGATTGAAATTCCTGCTGGAAAATATAAGAAGGCAACAAAAAGCTTGTCGTACTGCCAGTTAGAGTTTGATTGCTTGTATTCCAACTTGATTAGTCATGCTCCAGAAGGGGAATATTCAAAGATGGCACCGTTTCGGATTTTGAGTTTCGACATTGAATGTGCTGGTCGCAAAGGACATTTCCCCGAACCTACCCAAGATCCTGTGATCCAGATTGCTAATCTGGTAACTTTACAAGGAGAAGATCAGCCACTAATTCGTAATGTGATGACCCTTAATTCATGTTCCCCTATTGTTGGTGTTGATGTGATGTCATTTGATAAAGAAGAAGAAGTCCTGCTAGCTTGGAGGGATTTTATCCGTGAAGTAGACCCTGATATTATTATTGGATATAACATCTGCAAGTTTGACTTGCCATATCTAATTGAGAGAGCCGCGGCCCTAAAAATAGCAGAATTTCCAATTCTGGGCCGTATCAGAAACGGTAGAGTTCGAGTAAAAGATACAACTTTTTCATCAAGGCAGTATGGGACCAGAGAAAGTAAAGAAATCTCAATAGAAGGGAGAGTTCAGTTTGATTTGTTCCAGGTTATGCAAAGAGACTACAAATTAAGTTCTTATTCATTGAATTCTGTGTCGGCACATTTCCTCTCCGAGCAGAAGGAGGATGTTCATCATTCAATTATATCTGATCTTCAGAATGGAAATGCAGAAACACGAAGGCGCCTTGCAGTTTATTGCTTGAAGGATGCATATCTCCCCCAGCGACTTTTGGATAAATTGATGTTCATTTACAATTATGTGGAGATGGCTCGAGTTACAGGAGTCCCAATTTCCTTTCTACTGTCCAGGGGCCAAAGCATAAAGGTGCTTTCTCAACTTCTTAGGAAGGCAAAACAAAAGAATTTGGTCATCCCTAATGCTAAGCAGGCAGGGTCAGAACAAGGAACATTTGAAGGTGCCACTGTTTTAGAGGCAAGGGCTGGATTTTATGAAAAGCCAATTGCCACTTTAGATTTTGCTTCCTTGTATCCGTCTATTATGATGGCATATAATTTATGTTATTGCACACTGGTGACCCCTGAAAATGCTCGCAATCTCAACATCCCTCCGGAGTCAGTGTACAAAACACCATCTGGTGAAACATTTGTTAAATCAAATTTACAGAAGGGCATACTTCCTGAAATACTTGAAGAGCTATTAGCAGCCCGTAAAAGGGCAAAAGCAGACTTAAAGGAGGCAAAGGATCCCCTTGAGAAGGCTGTTCTAGATGGCAGACAGTTGGCCCTGAAGATTAGTGCAAATTCTGTATATGGGTTCACAGGGGCTACTATTGGTCAGTTACCTTGCTTAGAGATATCGTCAAGTGTAACAAGCTATGGTCGACAAATGATCGAGCACACTAAAAAGCTTGTGGAAGATAAATTTACAACAATTAATGGCTACGAACACAATGCTGAGGTAATATATGGAGACACGGATTCAGTCATGGTACAATTTGGTGTTTCTGCTGTAGAAGAGGCTATGAACCTGGGGAGAGAAGCTGCTGAATATATTAGCGGAACTTTCATAAAACCTATCAAGCTAGAATTTGAGAAGATTTACTATCCATATCTCCTGATTAGCAAGAAGAGATATGCTGGTTTGTATTGGACAAAACCGGACACTTTTGACAAAATGGACACTAAAGGCATTGAAACAGTCCGAAGAGACAATTGCTTGTTGGTCAAAAACTTGGTAACCGATTGCCTTCACAAAATACTGATTGACAGGGACATTCCAGGGGCAGTCCAGTATGTCAAGAATGCTATTTCAGATCTTCTCATGAACCGTATGGATTTATCACTTCTGGTTATTACGAAGGGTTTGACAAAGACAGGAGATGATTATGAAGTAAAGACAGCTCATGTTGAACTTGCTGAAAGAATGCGCAAGCGAGATGCTGCTACTGCACCAAATGTTGGAGACAGAGTACCTTATGTTATTATTAAAGCTGCCAAAGGTGCCAAGGCTTATGAGAAATCAGAGGATCCTATCTATGTGCTAGAGAACAACATACCAATAGATCCTCAGTACTATCTTGAGAATCAAATTAGCAAGCCAATTCTAAGAATTTTTGAGCCAATTCTAAAGAATGCCAGCAAAGAACTTCTCCATGGAAGCCACACAAGATCTATTTCTATTTCTACTCCTTCAAACAGTGGTATAATGAAATTTGCCAAGAAACAATTTACTTGCATTGGTTGCAAAGCTTTACTCAGTAATGGAGATCGCACTCTCTGCTCACATTGCAAAGGAAGGGAAGCTGAACTGTACTGTAAAACTGTAGCTCAAGTGTCGGATCTTGAGATACTTTTTGGTAGGTTGTGGACACAGTGTCAGGAGTGCCAAGGTTCACTTCATCAGGATGTTCTCTGCACAAGTCGAGATTGTCCAATTTTTTATCGACGCAAGAAGGCACAAAAAGATATGGCTGAAGCAAGGTTGCAATTGGACAGATGGAACTTCTAA 3255 0.4147 MNKTNTRKRPAPPSQQPPTKQALAQEDEFVDEDVFLDESLLSEDDDSAILRDMEQRQALAARLSKWTRPPLSQDYISQSCSILFQQLEIDYVIGESHKELLPNSSGPAAIIRIFGVTKEGHSVCCKVHGFEPYFYISCPPGMGPDDISHFHQILEARMREANRNNNVGKFVRRVEMVQRRSIMYYQQLKSHPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTYESNVLFALRFMIDCSIVGGNWIEIPAGKYKKATKSLSYCQLEFDCLYSNLISHAPEGEYSKMAPFRILSFDIECAGRKGHFPEPTQDPVIQIANLVTLQGEDQPLIRNVMTLNSCSPIVGVDVMSFDKEEEVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERAAALKIAEFPILGRIRNGRVRVKDTTFSSRQYGTRESKEISIEGRVQFDLFQVMQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKQAGSEQGTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPENARNLNIPPESVYKTPSGETFVKSNLQKGILPEILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTINGYEHNAEVIYGDTDSVMVQFGVSAVEEAMNLGREAAEYISGTFIKPIKLEFEKIYYPYLLISKKRYAGLYWTKPDTFDKMDTKGIETVRRDNCLLVKNLVTDCLHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKTAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYEKSEDPIYVLENNIPIDPQYYLENQISKPILRIFEPILKNASKELLHGSHTRSISISTPSNSGIMKFAKKQFTCIGCKALLSNGDRTLCSHCKGREAELYCKTVAQVSDLEILFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEARLQLDRWNF* 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1418 1084 SMART polmehr3 291 750 IPR006172 GO:0000166|GO:0003676|GO:0003887
Psa5g1418 1084 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 81 1084 - -
Psa5g1418 1084 CDD DNA_polB_delta_exo 287 516 - -
Psa5g1418 1084 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 81 1084 - -
Psa5g1418 1084 TIGRFAM pol2: DNA polymerase (pol2) 546 955 - -
Psa5g1418 1084 SUPERFAMILY DNA/RNA polymerases 549 959 IPR043502 -
Psa5g1418 1084 Pfam DNA polymerase family B, exonuclease domain 117 460 IPR006133 -
Psa5g1418 1084 PRINTS DNA-directed DNA-polymerase family B signature 583 596 IPR006172 GO:0000166|GO:0003676|GO:0003887
Psa5g1418 1084 PRINTS DNA-directed DNA-polymerase family B signature 675 687 IPR006172 GO:0000166|GO:0003676|GO:0003887
Psa5g1418 1084 PRINTS DNA-directed DNA-polymerase family B signature 736 744 IPR006172 GO:0000166|GO:0003676|GO:0003887
Psa5g1418 1084 MobiDBLite consensus disorder prediction 1 24 - -
Psa5g1418 1084 Pfam DNA polymerase family B 524 957 IPR006134 GO:0000166|GO:0003677
Psa5g1418 1084 ProSitePatterns DNA polymerase family B signature. 738 746 IPR017964 GO:0000166|GO:0003676
Psa5g1418 1084 CDD POLBc_delta 565 958 - -
Psa5g1418 1084 Gene3D DNA Polymerase, chain B, domain 1 88 263 - -
Psa5g1418 1084 Gene3D - 292 510 IPR036397 GO:0003676
Psa5g1418 1084 SUPERFAMILY Ribonuclease H-like 108 530 IPR012337 -
Psa5g1418 1084 Gene3D Palm domain of DNA polymerase 566 795 IPR023211 -
Psa5g1418 1084 Gene3D Helix hairpin bin 639 691 - -
Psa5g1418 1084 Pfam C4-type zinc-finger of DNA polymerase delta 994 1065 IPR025687 -
Psa5g1418 1084 Gene3D - 812 967 IPR042087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1418 Psa-Chr5 109705852 109731349 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1418 26 1084 Core DNA Replication Machinery Family AT5G63960 82.391 0.0 1859
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1418 K02327 - gmx:100817379 1960.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1418 5 109705852 109731349 Psa5g1418 5 109705852 109731349 ECH