Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1417 CCTTCCCTCAACCATGATTCGTTCCCTCTCGCTATTCCCAAGATAAAGCAACAACACGAAGAGAGAGAGAGAAAAAACAACGAAGTGATTCTCCCAATGAAGTTAATCGACGACGGAGCCGGTGGTCGGAAAGTGTTGGTCGGAGTTAAATTAGATCCCCGGAGCCGCGAGTTGCTGACGTGGGCACTTGTTAAGGTCGCCGAGCCCGGTGACCTCGTTATCGCGCTTCACGTTCTCGACACCGTAACTGAGGGAACATCGTCGCTGCTATCTCTGGTGAAGACTTTCGATTCAGTTCTCGCCGTTTACGAAGGCTTCTGCAATTTGAAGCAGGTTGATCTTAGGTTGAAAGTGTGCAGAGGTGATTCGGTTCGGAAGCTTCTAGTGCAAGAGGCGAGAGCGTTTGGAGTTTCGACGGTGATTCTAGGAACTTCGAAATCTCATCATACAATCCGTTCGTCTTCGTGGGTTGCTAAGTATTGCGCGAAGAAATTGCATAAGTGTGTTTCTGTTTTCGCTGTTGATAATGGCAAAATCGCTTTTCAAAGAGAAGCTAGTGATCAAGAAAAATTGCACGAAGGTCCACATTTATCATCAAGATCGTTGGTGATTTTTACTAATAAAAGTGTGAAGAATTGTGAAAGTTGTGCTCTGCGAGAGATTTCGGAAACTGAATATAATCAAGGGGACTTGCTTGATGATTGTGAAACGGAAAACCCGCTTGCTATGGTACCGTTTCAAAAGCTTGACGATGATTCCGTGGTGGGTACTTCTAAACAGACAAAACCTGGTTGGTCACTCATTCGCAATGTATTTCAGCACAAAAAGCATACATCTAAGTCTTCACCAAAAAATACATTTGTTTTCCAACGGGCAATACGACATTCCAGCAGTCATTCTTCAGCTGTAGTCTATCCAGATCATAAACAGATTAATATTGATCAACTTGATGAGTCTACCCTGGATGGGGAGAGTGGTGCCATTGTGCCGTTTGGATCCGCTATCATCTTACCTCCTCCCACTCTTTGCAGTGGTGCAGGTAGCCTTCCTGAAGAATTGTTGGTTTTACGGGAGAAGTACTCGGCTTCTTGTAGATTGTATAGTTTGCAGGAACTTGTTGCTGCAACTGTAAACTTCTCATCCAATAATTTGGTTGGCAAAGGTGGCAGTAGTGATGTTTACAGAGGGTGTCTTCCCGAAGGCAAGGAATTGGCTGTGAAAATTTTGAAACCGTCGGAGAATGTGGGAAACCATTTATTACTGGTTTATGATTTTTTATCAAGAGGAAGCCTAGAAGAAAACCTTCACGGTAACAGAATTAACTATAATTCATTTGGCTGGCAAGAGAGGTACCGAGTGGCTGTGGGTGTAGCCGAGGCCTTGGATTATCTGCATAATGGCTGTGCCCGAGCTGTAATCCATAGGGATGTCAAATCTTCTAATATCCTTCTTTCAGATGATTTTGAGGCTCAGCTCTCAGATTTTGGACTGGCTAGTTGGGGTTCTTCTTCTTCTCATATTATTTGTACTGATGTTGCCGGAACATTTGGGTACCTAGCTCCTGAATATTTTATGCACGGTAGAGTTACTGAAAAAATTGATGTATATGCATTTGGTGTTGTACTCCTTGAGCTTCTATCCAATAGGAAACCCATTAACAATGAATCTCCAAAGGGCCAAGAGAGCCTTGTTATGTGGGCAACATCAATCTTGAAAAGTGGGAAGATTTCCCAGTTGCTTGACCCAAGCCTTGGCAGTAAATACAATGATTGCCAGATCAAGAGAATGGTTTTAGCTGCTACTCTTTGTATTAGACGAGTTCCTAGATTGCGACCTCAAATCCGAGTTATACTGAAACTTCTTCATGGTGATGAAGAAGTAACAAGATGGGCAGAACAAGAAGTTTGTGCACCGGAGACACATGATGGATTTGACGAGGAACCAGTTCGAACAAATATCCAGTCCCACCTTAACCTTGCTTTGCTGGACTTGGAGGATGATGCAGTTTCTATCAGTAGCACTGAGCAGAGTGTCTCATTGGAGGATTATTTGCAAGGAAGATGGAGTCGCTGCTCAAGTTTTGATTAA 2088 0.4349 PSLNHDSFPLAIPKIKQQHEERERKNNEVILPMKLIDDGAGGRKVLVGVKLDPRSRELLTWALVKVAEPGDLVIALHVLDTVTEGTSSLLSLVKTFDSVLAVYEGFCNLKQVDLRLKVCRGDSVRKLLVQEARAFGVSTVILGTSKSHHTIRSSSWVAKYCAKKLHKCVSVFAVDNGKIAFQREASDQEKLHEGPHLSSRSLVIFTNKSVKNCESCALREISETEYNQGDLLDDCETENPLAMVPFQKLDDDSVVGTSKQTKPGWSLIRNVFQHKKHTSKSSPKNTFVFQRAIRHSSSHSSAVVYPDHKQINIDQLDESTLDGESGAIVPFGSAIILPPPTLCSGAGSLPEELLVLREKYSASCRLYSLQELVAATVNFSSNNLVGKGGSSDVYRGCLPEGKELAVKILKPSENVGNHLLLVYDFLSRGSLEENLHGNRINYNSFGWQERYRVAVGVAEALDYLHNGCARAVIHRDVKSSNILLSDDFEAQLSDFGLASWGSSSSHIICTDVAGTFGYLAPEYFMHGRVTEKIDVYAFGVVLLELLSNRKPINNESPKGQESLVMWATSILKSGKISQLLDPSLGSKYNDCQIKRMVLAATLCIRRVPRLRPQIRVILKLLHGDEEVTRWAEQEVCAPETHDGFDEEPVRTNIQSHLNLALLDLEDDAVSISSTEQSVSLEDYLQGRWSRCSSFD* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1417 695 Pfam Protein kinase domain 417 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g1417 695 SUPERFAMILY Protein kinase-like (PK-like) 361 630 IPR011009 -
Psa5g1417 695 CDD USP_Like 44 169 - -
Psa5g1417 695 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 416 689 - -
Psa5g1417 695 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 39 414 - -
Psa5g1417 695 Pfam Universal stress protein family 43 168 IPR006016 -
Psa5g1417 695 PANTHER OS01G0253100 PROTEIN 39 414 IPR045271 GO:0004714|GO:0006468
Psa5g1417 695 PANTHER OS01G0253100 PROTEIN 416 689 IPR045271 GO:0004714|GO:0006468
Psa5g1417 695 Gene3D Phosphorylase Kinase; domain 1 355 429 - -
Psa5g1417 695 ProSitePatterns Protein kinases ATP-binding region signature. 385 407 IPR017441 GO:0005524
Psa5g1417 695 ProSiteProfiles Protein kinase domain profile. 289 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g1417 695 Gene3D HUPs 42 175 IPR014729 -
Psa5g1417 695 SMART serkin_6 379 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g1417 695 Gene3D Transferase(Phosphotransferase) domain 1 430 638 - -
Psa5g1417 695 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Psa5g1417 695 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 43 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1417 Psa-Chr5 109609171 109612386 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1417 366 614 Trihelix Transcription Factor Family AT1G68690 41.844 5.69e-61 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Psa5g1417 Pkinase 2.2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1417 - - gmx:100815722 1048.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1417 5 109609171 109612386 Psa5g1417 5 109609171 109612386 ECH
Psa7g4040 7 332604769 332608936 Psa5g1417 5 109609171 109612386 ECH
Psa6g0933 6 35133450 35137586 Psa5g1417 5 109609171 109612386 PCT