Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1406 ATGTCTGCAACCGGCAAGGGGAAGAAGCGCGAGGAGCACGACCAAGCTTCCGACGGCGACTCTGAAGGCCACGCGCCTCCCAAAAAGGCACTCAAGAAAGATTCCGACGATAATAACTCCGATGACATCACCGTCTGTGAGATTGGGAAGAACAGGAAGGTTTCCGTGAGGATCTGGCAGGGTAAGATTTGGGTGGACATTCGTGAATTTTACATCAAAGATGGGAAGCAATTGCCTGGCAAAAAAGGTATCTCTCTGTCCATGGATCAGTGGAATGTGCTTCGTGAGCATATTGAAGACATTGACAAGGCTGTGGTTGAGAAGTCTTAG 330 0.4939 MSATGKGKKREEHDQASDGDSEGHAPPKKALKKDSDDNNSDDITVCEIGKNRKVSVRIWQGKIWVDIREFYIKDGKQLPGKKGISLSMDQWNVLREHIEDIDKAVVEKS* 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1406 109 MobiDBLite consensus disorder prediction 1 40 - -
Psa5g1406 109 Gene3D Transcriptional Coactivator Pc4; Chain A 35 109 IPR009044 GO:0003677|GO:0006355
Psa5g1406 109 MobiDBLite consensus disorder prediction 1 41 - -
Psa5g1406 109 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 6 107 IPR045125 GO:0003713|GO:0060261
Psa5g1406 109 SUPERFAMILY ssDNA-binding transcriptional regulator domain 45 105 IPR009044 GO:0003677|GO:0006355
Psa5g1406 109 PANTHER BNAC09G47220D PROTEIN 6 107 - -
Psa5g1406 109 Coils Coil 108 109 - -
Psa5g1406 109 Pfam Transcriptional Coactivator p15 (PC4) 46 97 IPR003173 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1406 Psa-Chr5 109031982 109034582 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Psa5g1406 PC4 2.6e-23 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1406 K25815 - cit:102607972 151.369