Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa5g1398 | ATGAGTGGAAGTGATAGAAAGCGCTCTTCAAAGTGGGATTTGAGTGATGAACCCAAATTCACATCCGGTAGCAAGCAAATACGGTCTGGGCGGTCCTCTGCAGATGTTGCTGATGTTCAAGAAGGAAATGATAAATTAAGACCTGCTATGGGATATTCATCAAAGGAATATTTTTCTGGAGATAGATGTTCAAATGAGGAAGATGCTATGATTAAAGACCATAGAGTGTTGGACACAAGAAGAGAATGGGACACTGATGGAAGTTACGAGGAACGGAAACAAAAGAGACACAGTCAATCTCCTAAAAATGCTTGGAGCAGAAGCAGTCGGAGCCGTAGCCGTAGTCGGAGCCGGAGCCCTCCTCGTGGTTTTAGGCGGGATTCAGGAGTTGATGATAGAAAAAGGATTAGGGTTGGAGGATCAACACGACCATGCAGAGATTTTGCTGTTGGTAAATGCAGAAGAGGCAGTCTTTGCAATTTTCTGCATCATGATAACCAAAATCATGAGGATAGTTGGGAAGGCAAACACAGGGAAGATGGAGCTCCCAGATACTCCGCTACCTATGAGAGCGGCGACCATTCTCTTAAGAGTGGTAGATCTAACAAAGCTTGCATAAATTTTGCAAAAGGCAGCTGTAGAATGGGAGCATCTTGCAAGTATGTGCATGATAACGATTCTGATGGATATGGTAAAGTTTATATGGATGAATTCACTAGAGAAAGGGAAGATGGAGGAGCTCCTAGATATTTTGCTGCCCATGAGAGAGAAGACCGTTCTTTTAAGAGTGGTAGATCTAATGAAGCTTGTATAAATTTTGCAAAAGGAAGGTGTAGAATGGGAACATCTTGCAACTTTGTGCATGATAATGACTCTGATGGATACGGCAAAGTATTTAAGGATGAATTCACTAGAGAAAGGGAAATTGACAGAAGGCACAGAGATAATTCTTTTGAGCAGAGTGGCGGGCATGTGCCTAGCCGCACTAGTGATACTCCTTGCAGGTTTTTCGCTAGTGGAAATTGTCGAAATGGTAAACATTGTAGGTTTTCTACTTTTGAGCAGAGTGGCGGGCATGTGCCTAGCCGCACTAGTGATACTCCTTGCAGGTTTTTCGCTAGTGGAAATTGTCGAAATGGTAAACATTGTAGGTTTTCTCACGATAGGCCATCATTTAAGAGCCCTAATAGAAGATTAAGGGATGATAGATGGGCAAGAAATCCAGGTGGAGATTATCAAATGGATAGACGAAAGTTGAGTGATTCCATTAGTCCAAATAGAAGGCTAAGAGATGATAGGTGGGGTTCAGATGGCGACATGGCTGATCCAGATAGAGTCAGGGACAGTCCAAAGCGGAATGATACAATTTCTGTCTCTGATACAGCAAATCTGATGGAGAATAAAAGTGGAAATGTAGGAAATACTGGTGCCAACATGCACGGCTCCCAGTCATTAGGCACAACAGACATTTGGCCGGGTGATGCAGAAATGTCTCCTGATTGGAAGTATAGGACAGGATCTTCTAGCCATATGGAAGATGCACAGAATAAGCATGGTATAAGCCAGGGTGATACGTATTTAGCCATCTCTGAACAGGACAGAATACAGCTTGCTCCAGGACAAAGCATCAACCAGAATGCACAGAATGTAAATCCTTTGCATACTTCCAGCAGCCATGCAGTTGGACAAAGTCAAGTGGATGTTCGTGCTTTTCCTTCAAGAGAAGGAACTGTTGATGCTACCCACAGCCAAGAAGTATCCACTGAGAAAAAGTACTCTGTGGAATCAAATATCATGGATTCGGGCTTATCACAAGTTGGTTCAATAAATCCTCCAACTCAAAACACGGTAAGCAATGAACAGCTTGCCCAACTCACGGATCTCTCAGCCTCTCTGGCTCATATCCTTGGATCAGGTCAGCAGCTTCCGCAGCTATACGCTGCCTTAAATTCTCACGAACTAAAGCACAGTCCTTCCCAAGCAAATACTCAAGTGCCTGTTTCGATCACATGCATCAAGCCAGATCCTGCTGTTGGGCTCCCAAAGCATTATGAACCAATGATTGGTAGTAATGAGCAAAAGAATGCTGATGCAAGTGGCATGCCCCCAACCATTCCTCCAAGTAAAAATATTGCCAAAGTAGAAATGCTGTCACCGTTGTCTAATTTAGGAAAACAAAATTATGGGGATTCTATTAAGGGTGCCTCCTCAGAACTTATCAAGAGTGATAATCTAATCCGTTTGCAGCCTGGTCATAACACAGTGCTTTCTAACAATGAAGAGGTAGCCAAGGAAAGGAAAAATTCTCAAGACGGTCCTAAAAGTACAAAAGAGAATGGTCCACAAAACATGGACCAAGATGGTAAACTTGATGATGACAAACAAACAAAGGATATGAAAGGGATTCGTGCATTTAAATTTGCACTGGCTGAGTTTGTTAAGGAGCTTTTGAAACCAGCCTGGAAAGAAGGTCAAGTAAATAAAGATGCTTATAAAACAATTGTGAAGAAAGTTGTTGATAAAGTATCGAGTACCATGCAGGGGGCCAACATTCCTCAGACACAAGAGAAAATTGACCAATATTTGTCATTTTCAAAGCCAAAGGTTAACAAACTTGTACAGGCCTATGTGGAAAAGGCTGCGAAGGGTTAG | 2652 | 0.4261 | MSGSDRKRSSKWDLSDEPKFTSGSKQIRSGRSSADVADVQEGNDKLRPAMGYSSKEYFSGDRCSNEEDAMIKDHRVLDTRREWDTDGSYEERKQKRHSQSPKNAWSRSSRSRSRSRSRSPPRGFRRDSGVDDRKRIRVGGSTRPCRDFAVGKCRRGSLCNFLHHDNQNHEDSWEGKHREDGAPRYSATYESGDHSLKSGRSNKACINFAKGSCRMGASCKYVHDNDSDGYGKVYMDEFTREREDGGAPRYFAAHEREDRSFKSGRSNEACINFAKGRCRMGTSCNFVHDNDSDGYGKVFKDEFTREREIDRRHRDNSFEQSGGHVPSRTSDTPCRFFASGNCRNGKHCRFSTFEQSGGHVPSRTSDTPCRFFASGNCRNGKHCRFSHDRPSFKSPNRRLRDDRWARNPGGDYQMDRRKLSDSISPNRRLRDDRWGSDGDMADPDRVRDSPKRNDTISVSDTANLMENKSGNVGNTGANMHGSQSLGTTDIWPGDAEMSPDWKYRTGSSSHMEDAQNKHGISQGDTYLAISEQDRIQLAPGQSINQNAQNVNPLHTSSSHAVGQSQVDVRAFPSREGTVDATHSQEVSTEKKYSVESNIMDSGLSQVGSINPPTQNTVSNEQLAQLTDLSASLAHILGSGQQLPQLYAALNSHELKHSPSQANTQVPVSITCIKPDPAVGLPKHYEPMIGSNEQKNADASGMPPTIPPSKNIAKVEMLSPLSNLGKQNYGDSIKGASSELIKSDNLIRLQPGHNTVLSNNEEVAKERKNSQDGPKSTKENGPQNMDQDGKLDDDKQTKDMKGIRAFKFALAEFVKELLKPAWKEGQVNKDAYKTIVKKVVDKVSSTMQGANIPQTQEKIDQYLSFSKPKVNKLVQAYVEKAAKG* | 884 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa5g1398 | 883 | ProSiteProfiles | Zinc finger C3H1-type profile. | 139 | 166 | IPR000571 | GO:0046872 | |
Psa5g1398 | 883 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Psa5g1398 | 883 | MobiDBLite | consensus disorder prediction | 1 | 138 | - | - | |
Psa5g1398 | 883 | Gene3D | - | 262 | 351 | - | - | |
Psa5g1398 | 883 | Gene3D | - | 140 | 229 | - | - | |
Psa5g1398 | 883 | ProSiteProfiles | Zinc finger C3H1-type profile. | 363 | 390 | IPR000571 | GO:0046872 | |
Psa5g1398 | 883 | MobiDBLite | consensus disorder prediction | 60 | 98 | - | - | |
Psa5g1398 | 883 | PANTHER | ZINC FINGER CCCH DOMAIN PROTEIN-RELATED | 466 | 881 | - | - | |
Psa5g1398 | 883 | PANTHER | ZINC FINGER CCCH DOMAIN PROTEIN-RELATED | 352 | 474 | - | - | |
Psa5g1398 | 883 | PANTHER | ZINC FINGER CCCH DOMAIN PROTEIN-RELATED | 244 | 352 | - | - | |
Psa5g1398 | 883 | PANTHER | ZINC FINGER CCCH DOMAIN PROTEIN-RELATED | 1 | 243 | - | - | |
Psa5g1398 | 883 | Pfam | RNA-binding, Nab2-type zinc finger | 204 | 223 | - | - | |
Psa5g1398 | 883 | Pfam | RNA-binding, Nab2-type zinc finger | 333 | 351 | - | - | |
Psa5g1398 | 883 | Pfam | RNA-binding, Nab2-type zinc finger | 269 | 288 | - | - | |
Psa5g1398 | 883 | MobiDBLite | consensus disorder prediction | 751 | 794 | - | - | |
Psa5g1398 | 883 | Gene3D | - | 361 | 430 | - | - | |
Psa5g1398 | 883 | ProSiteProfiles | Zinc finger C3H1-type profile. | 264 | 291 | IPR000571 | GO:0046872 | |
Psa5g1398 | 883 | ProSiteProfiles | Zinc finger C3H1-type profile. | 199 | 226 | IPR000571 | GO:0046872 | |
Psa5g1398 | 883 | MobiDBLite | consensus disorder prediction | 759 | 773 | - | - | |
Psa5g1398 | 883 | Pfam | CCCH-type zinc finger | 368 | 388 | IPR041367 | - | |
Psa5g1398 | 883 | SMART | c3hfinal6 | 201 | 225 | IPR000571 | GO:0046872 | |
Psa5g1398 | 883 | SMART | c3hfinal6 | 328 | 361 | IPR000571 | GO:0046872 | |
Psa5g1398 | 883 | SMART | c3hfinal6 | 141 | 165 | IPR000571 | GO:0046872 | |
Psa5g1398 | 883 | SMART | c3hfinal6 | 265 | 290 | IPR000571 | GO:0046872 | |
Psa5g1398 | 883 | SMART | c3hfinal6 | 363 | 389 | IPR000571 | GO:0046872 | |
Psa5g1398 | 883 | MobiDBLite | consensus disorder prediction | 16 | 33 | - | - | |
Psa5g1398 | 883 | ProSiteProfiles | Zinc finger C3H1-type profile. | 328 | 355 | IPR000571 | GO:0046872 | |
Psa5g1398 | 883 | SUPERFAMILY | CCCH zinc finger | 365 | 388 | IPR036855 | GO:0046872 | |
Psa5g1398 | 883 | MobiDBLite | consensus disorder prediction | 388 | 454 | - | - | |
Psa5g1398 | 883 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 142 | 164 | IPR000571 | GO:0046872 | |
Psa5g1398 | 883 | PANTHER | PROTEIN FRIGIDA-ESSENTIAL 1 | 352 | 474 | - | - | |
Psa5g1398 | 883 | PANTHER | PROTEIN FRIGIDA-ESSENTIAL 1 | 1 | 243 | - | - | |
Psa5g1398 | 883 | PANTHER | PROTEIN FRIGIDA-ESSENTIAL 1 | 466 | 881 | - | - | |
Psa5g1398 | 883 | PANTHER | PROTEIN FRIGIDA-ESSENTIAL 1 | 244 | 352 | - | - | |
Psa5g1398 | 883 | MobiDBLite | consensus disorder prediction | 120 | 138 | - | - |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Psa5g1398 | zf-CCCH | 1.9e-05 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa5g1398 | - | K22909 | gmx:100803151 | 806.979 |