Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1398 ATGAGTGGAAGTGATAGAAAGCGCTCTTCAAAGTGGGATTTGAGTGATGAACCCAAATTCACATCCGGTAGCAAGCAAATACGGTCTGGGCGGTCCTCTGCAGATGTTGCTGATGTTCAAGAAGGAAATGATAAATTAAGACCTGCTATGGGATATTCATCAAAGGAATATTTTTCTGGAGATAGATGTTCAAATGAGGAAGATGCTATGATTAAAGACCATAGAGTGTTGGACACAAGAAGAGAATGGGACACTGATGGAAGTTACGAGGAACGGAAACAAAAGAGACACAGTCAATCTCCTAAAAATGCTTGGAGCAGAAGCAGTCGGAGCCGTAGCCGTAGTCGGAGCCGGAGCCCTCCTCGTGGTTTTAGGCGGGATTCAGGAGTTGATGATAGAAAAAGGATTAGGGTTGGAGGATCAACACGACCATGCAGAGATTTTGCTGTTGGTAAATGCAGAAGAGGCAGTCTTTGCAATTTTCTGCATCATGATAACCAAAATCATGAGGATAGTTGGGAAGGCAAACACAGGGAAGATGGAGCTCCCAGATACTCCGCTACCTATGAGAGCGGCGACCATTCTCTTAAGAGTGGTAGATCTAACAAAGCTTGCATAAATTTTGCAAAAGGCAGCTGTAGAATGGGAGCATCTTGCAAGTATGTGCATGATAACGATTCTGATGGATATGGTAAAGTTTATATGGATGAATTCACTAGAGAAAGGGAAGATGGAGGAGCTCCTAGATATTTTGCTGCCCATGAGAGAGAAGACCGTTCTTTTAAGAGTGGTAGATCTAATGAAGCTTGTATAAATTTTGCAAAAGGAAGGTGTAGAATGGGAACATCTTGCAACTTTGTGCATGATAATGACTCTGATGGATACGGCAAAGTATTTAAGGATGAATTCACTAGAGAAAGGGAAATTGACAGAAGGCACAGAGATAATTCTTTTGAGCAGAGTGGCGGGCATGTGCCTAGCCGCACTAGTGATACTCCTTGCAGGTTTTTCGCTAGTGGAAATTGTCGAAATGGTAAACATTGTAGGTTTTCTACTTTTGAGCAGAGTGGCGGGCATGTGCCTAGCCGCACTAGTGATACTCCTTGCAGGTTTTTCGCTAGTGGAAATTGTCGAAATGGTAAACATTGTAGGTTTTCTCACGATAGGCCATCATTTAAGAGCCCTAATAGAAGATTAAGGGATGATAGATGGGCAAGAAATCCAGGTGGAGATTATCAAATGGATAGACGAAAGTTGAGTGATTCCATTAGTCCAAATAGAAGGCTAAGAGATGATAGGTGGGGTTCAGATGGCGACATGGCTGATCCAGATAGAGTCAGGGACAGTCCAAAGCGGAATGATACAATTTCTGTCTCTGATACAGCAAATCTGATGGAGAATAAAAGTGGAAATGTAGGAAATACTGGTGCCAACATGCACGGCTCCCAGTCATTAGGCACAACAGACATTTGGCCGGGTGATGCAGAAATGTCTCCTGATTGGAAGTATAGGACAGGATCTTCTAGCCATATGGAAGATGCACAGAATAAGCATGGTATAAGCCAGGGTGATACGTATTTAGCCATCTCTGAACAGGACAGAATACAGCTTGCTCCAGGACAAAGCATCAACCAGAATGCACAGAATGTAAATCCTTTGCATACTTCCAGCAGCCATGCAGTTGGACAAAGTCAAGTGGATGTTCGTGCTTTTCCTTCAAGAGAAGGAACTGTTGATGCTACCCACAGCCAAGAAGTATCCACTGAGAAAAAGTACTCTGTGGAATCAAATATCATGGATTCGGGCTTATCACAAGTTGGTTCAATAAATCCTCCAACTCAAAACACGGTAAGCAATGAACAGCTTGCCCAACTCACGGATCTCTCAGCCTCTCTGGCTCATATCCTTGGATCAGGTCAGCAGCTTCCGCAGCTATACGCTGCCTTAAATTCTCACGAACTAAAGCACAGTCCTTCCCAAGCAAATACTCAAGTGCCTGTTTCGATCACATGCATCAAGCCAGATCCTGCTGTTGGGCTCCCAAAGCATTATGAACCAATGATTGGTAGTAATGAGCAAAAGAATGCTGATGCAAGTGGCATGCCCCCAACCATTCCTCCAAGTAAAAATATTGCCAAAGTAGAAATGCTGTCACCGTTGTCTAATTTAGGAAAACAAAATTATGGGGATTCTATTAAGGGTGCCTCCTCAGAACTTATCAAGAGTGATAATCTAATCCGTTTGCAGCCTGGTCATAACACAGTGCTTTCTAACAATGAAGAGGTAGCCAAGGAAAGGAAAAATTCTCAAGACGGTCCTAAAAGTACAAAAGAGAATGGTCCACAAAACATGGACCAAGATGGTAAACTTGATGATGACAAACAAACAAAGGATATGAAAGGGATTCGTGCATTTAAATTTGCACTGGCTGAGTTTGTTAAGGAGCTTTTGAAACCAGCCTGGAAAGAAGGTCAAGTAAATAAAGATGCTTATAAAACAATTGTGAAGAAAGTTGTTGATAAAGTATCGAGTACCATGCAGGGGGCCAACATTCCTCAGACACAAGAGAAAATTGACCAATATTTGTCATTTTCAAAGCCAAAGGTTAACAAACTTGTACAGGCCTATGTGGAAAAGGCTGCGAAGGGTTAG 2652 0.4261 MSGSDRKRSSKWDLSDEPKFTSGSKQIRSGRSSADVADVQEGNDKLRPAMGYSSKEYFSGDRCSNEEDAMIKDHRVLDTRREWDTDGSYEERKQKRHSQSPKNAWSRSSRSRSRSRSRSPPRGFRRDSGVDDRKRIRVGGSTRPCRDFAVGKCRRGSLCNFLHHDNQNHEDSWEGKHREDGAPRYSATYESGDHSLKSGRSNKACINFAKGSCRMGASCKYVHDNDSDGYGKVYMDEFTREREDGGAPRYFAAHEREDRSFKSGRSNEACINFAKGRCRMGTSCNFVHDNDSDGYGKVFKDEFTREREIDRRHRDNSFEQSGGHVPSRTSDTPCRFFASGNCRNGKHCRFSTFEQSGGHVPSRTSDTPCRFFASGNCRNGKHCRFSHDRPSFKSPNRRLRDDRWARNPGGDYQMDRRKLSDSISPNRRLRDDRWGSDGDMADPDRVRDSPKRNDTISVSDTANLMENKSGNVGNTGANMHGSQSLGTTDIWPGDAEMSPDWKYRTGSSSHMEDAQNKHGISQGDTYLAISEQDRIQLAPGQSINQNAQNVNPLHTSSSHAVGQSQVDVRAFPSREGTVDATHSQEVSTEKKYSVESNIMDSGLSQVGSINPPTQNTVSNEQLAQLTDLSASLAHILGSGQQLPQLYAALNSHELKHSPSQANTQVPVSITCIKPDPAVGLPKHYEPMIGSNEQKNADASGMPPTIPPSKNIAKVEMLSPLSNLGKQNYGDSIKGASSELIKSDNLIRLQPGHNTVLSNNEEVAKERKNSQDGPKSTKENGPQNMDQDGKLDDDKQTKDMKGIRAFKFALAEFVKELLKPAWKEGQVNKDAYKTIVKKVVDKVSSTMQGANIPQTQEKIDQYLSFSKPKVNKLVQAYVEKAAKG* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1398 883 ProSiteProfiles Zinc finger C3H1-type profile. 139 166 IPR000571 GO:0046872
Psa5g1398 883 MobiDBLite consensus disorder prediction 1 15 - -
Psa5g1398 883 MobiDBLite consensus disorder prediction 1 138 - -
Psa5g1398 883 Gene3D - 262 351 - -
Psa5g1398 883 Gene3D - 140 229 - -
Psa5g1398 883 ProSiteProfiles Zinc finger C3H1-type profile. 363 390 IPR000571 GO:0046872
Psa5g1398 883 MobiDBLite consensus disorder prediction 60 98 - -
Psa5g1398 883 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 466 881 - -
Psa5g1398 883 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 352 474 - -
Psa5g1398 883 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 244 352 - -
Psa5g1398 883 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 1 243 - -
Psa5g1398 883 Pfam RNA-binding, Nab2-type zinc finger 204 223 - -
Psa5g1398 883 Pfam RNA-binding, Nab2-type zinc finger 333 351 - -
Psa5g1398 883 Pfam RNA-binding, Nab2-type zinc finger 269 288 - -
Psa5g1398 883 MobiDBLite consensus disorder prediction 751 794 - -
Psa5g1398 883 Gene3D - 361 430 - -
Psa5g1398 883 ProSiteProfiles Zinc finger C3H1-type profile. 264 291 IPR000571 GO:0046872
Psa5g1398 883 ProSiteProfiles Zinc finger C3H1-type profile. 199 226 IPR000571 GO:0046872
Psa5g1398 883 MobiDBLite consensus disorder prediction 759 773 - -
Psa5g1398 883 Pfam CCCH-type zinc finger 368 388 IPR041367 -
Psa5g1398 883 SMART c3hfinal6 201 225 IPR000571 GO:0046872
Psa5g1398 883 SMART c3hfinal6 328 361 IPR000571 GO:0046872
Psa5g1398 883 SMART c3hfinal6 141 165 IPR000571 GO:0046872
Psa5g1398 883 SMART c3hfinal6 265 290 IPR000571 GO:0046872
Psa5g1398 883 SMART c3hfinal6 363 389 IPR000571 GO:0046872
Psa5g1398 883 MobiDBLite consensus disorder prediction 16 33 - -
Psa5g1398 883 ProSiteProfiles Zinc finger C3H1-type profile. 328 355 IPR000571 GO:0046872
Psa5g1398 883 SUPERFAMILY CCCH zinc finger 365 388 IPR036855 GO:0046872
Psa5g1398 883 MobiDBLite consensus disorder prediction 388 454 - -
Psa5g1398 883 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 164 IPR000571 GO:0046872
Psa5g1398 883 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 352 474 - -
Psa5g1398 883 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 243 - -
Psa5g1398 883 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 466 881 - -
Psa5g1398 883 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 244 352 - -
Psa5g1398 883 MobiDBLite consensus disorder prediction 120 138 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa5g1398 zf-CCCH 1.9e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1398 - K22909 gmx:100803151 806.979