Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1368 ATGCAAGGTGAATTAGAGTTACCACCTGGTTTCAGATTTCATCCAACCGATGAAGAGTTGGTGAATCACTACTTGTGTAGGAAATGTGCTGGTCAATCAATTTCTGTTCCCGTTGTTAAAGAAGTTGATTTGTATAAGTTTGATCCATGGCAGCTTCCTGAAATGGGTTATCACAGTGAGAAAGAATGGTACTTCTTCTCTCCGAGGGACCGGAAATACCCAAACGGCTCCCGGCCTAACCGGGCTGCTGGAAGTGGTTACTGGAAGGCTACTGGAGCTGATAAACCAATAGGGAAAGTGAAGCCAATGGGGATAAAAAAGGCACTGGTTTTCTATGCCGGGAAAGCCCCGAAAGGAGTGAAAACTAATTGGATTATGCATGAGTATCGTCTTGCCAACGTTGATAGGTCCGCCGGCAAGAAAAATAACTTGAGGCTAGATGATTGGGTGTTGTGTAGAATTTACAACAAGAAAGGAAAGATTGAGAAATTCAACACTGGTAACACAGTAGAGGTTCATAATTATTATGAGCATGAAGAAGAAGAGCATGAGAGAAAGCCAGAAATTCAGAAGTTGGTGAATTACCAATTGTACATGGACACATCGGATTCGGTTCCGAAGCTGCACACGGACTCGAGCAGCTCCGGGCACGTGGTTTCGCCGGATGTCACGTGCGACAGAGAGGTGCAGAGTGAACCAAAATGGAATGAGCTTGGGATACAGCTGGATAACGCGTTTGGTTTTGAGTTTAATTACTTGGATAATAATACCCTTTCATTTGAGTATGATGATGACCCTTTTGGGACCAATGATCAGTACCAAATCAACCAGCTTTCTCCGTTACAGGATATGTTCATGTACCAGCAAAAGCCATTTTGA 879 0.4369 MQGELELPPGFRFHPTDEELVNHYLCRKCAGQSISVPVVKEVDLYKFDPWQLPEMGYHSEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKVKPMGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSAGKKNNLRLDDWVLCRIYNKKGKIEKFNTGNTVEVHNYYEHEEEEHERKPEIQKLVNYQLYMDTSDSVPKLHTDSSSSGHVVSPDVTCDREVQSEPKWNELGIQLDNAFGFEFNYLDNNTLSFEYDDDPFGTNDQYQINQLSPLQDMFMYQQKPF* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1368 292 PANTHER NAC TRANSCRIPTION FACTOR 56 5 269 - -
Psa5g1368 292 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Psa5g1368 292 PANTHER NAC DOMAIN-CONTAINING PROTEIN 2-LIKE 5 269 - -
Psa5g1368 292 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Psa5g1368 292 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Psa5g1368 292 Gene3D NAC domain 16 162 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1368 Psa-Chr5 107006307 107008217 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1368 1 292 NAC Transcription Factor Family AT1G01720 61.967 1.84e-124 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa5g1368 NAM 1.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1368 - - gmx:100814504 476.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1368 5 107006307 107008217 Psa5g1368 5 107006307 107008217 ECH
Psa7g1017 7 77140813 77141903 Psa5g1368 5 107006307 107008217 ECH