Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1348 ATGGCCACAGAAATTTGTGGCGGGTCTCTATTCTTATCCGTTAAAACTGAATTGCAACGCCAAAAGCTTTTACTCCATTCTCAACGAACAACAACAACCGCCATCTTATCCGTTAAAACTGAATTGCAACGCCAAAAGCTTTTACTCCATTCTCAACGAACAACAACAACCGCCACTAGATTCCACTCATCCAAACCTCGCTTTTCTTTCCGCTCTTCCAATGCCTCCTCCTTTCACCACCGCAACTCCTCCGTCTTCTGCCGCGTTGCCACCACCGATACACTCTCCGACTCCGACTCTGACTCCACCGCTAGAGACGGCCAGGATCGTCTCTCTAAGGTGCCGGTGTCTAATATAAGAAACTTCTCCATCATTGCTCATATTGACCATGGGAAATCCACGTTAGCCGATAAATTGCTTCAGGTTACTGGTACCGTTCCTCAGCGAGAGATGAAGGAACAGTTTCTTGATAACATGGATTTGGAGAGGGAAAGAGGCATCACTATTAAGCTTCAGGCAGCTCGAATGCGCTATGTGTTTGAAAATAAACCATATTGCTTAAATTTAATAGATACTCCAGGACATGTTGACTTCTCGTACGAGGTTTCTCGATCACTTGCTGCATGTGAGGGTGCTCTCCTTGTAGTAGATGCTTCTCAGGGGGTTGAAGCGCAAACACTCGCTAATGTTTATTTAGCCTTGGCTAACAACTTAGAAATTATCCCTGTTTTGAACAAAATAGATCTTCCGGGTGCCGAACCAGATCGAGTTATCAAGGAGATTGAAGAGGTTATAGGTCTAGATTGTAGCAACGCCATTCTCTGCTCTGCAAAGGAAGGAATAGGTATAATGGAGATTCTCAATGAAATTGTTGCAAAAGTTCCCCCACCCGCTGATACATCAAAAAGGCCATTGAGGGCTTTAATATTTGATAGTTACTATGATCCATATAGAGGTGTTATTGTATACTTTCGAGTTGTAGATGGCACTATAAAGAAAGGTGACAGAGTTACTTTTATGGCCAGTGGTAAGGATTATTTTGCCGATGAAATTGGGGTTTTGTCCCCCAATCAACTTCAAGCTGAAGAGTTGTTTGCTGGTGAGGTGGGCTATCTATCCGCATCAATAAGAACAGTAGCTGATGCCAGAGTGGGTGACACAATCACGCACCATTTAAAAAAGGCGGACAGTTCACTTCCTGGATATGAGGAAGCTACTCCTATGGTGTTCTGTGGCCTGTTTCCCGTTGATGCTGACGAATTTCCTGATCTACGAGATGCACTTGAGAAGCTTCAACTCAATGATGCTGCACTAAAGTTTGAACCTGAGACCTCAAGTGCTATGGGATTTGGTTTTAGATGTGGGTTTCTGGGACTTCTCCACATGGAAATTGTTCAGGAGAGACTTGAGAGAGAATACAATTTGAGCCTGATAACTACCGCCCCAAGTGTTGTATACAGAGTAACCTGTATTAATGGTGATACTGTTGAATGCTCAAATCCATCTTTACTTCCCGAGCCTGGTAAAAGAAAATCAATCGAGGAGCCAGTTGTTAAGATTGAGATGCTTACGCCGAAGGACTATATTGGTCCTCTTATGGAACTGGCTCAAGAAAGAAGAGGGCAGTTCAAAGAAATGAAATTTATCACTGAAATTAGGGCATCGCTCACCTATGAATTACCATTGGCTGAGATGGTTGGTGATTTCTTTGACCAGTTAAAGTCAAGAAGTAAGGGATACGCTAGTATGGAGTATACCGTTATCGGGTAA 1770 0.4333 MATEICGGSLFLSVKTELQRQKLLLHSQRTTTTAILSVKTELQRQKLLLHSQRTTTTATRFHSSKPRFSFRSSNASSFHHRNSSVFCRVATTDTLSDSDSDSTARDGQDRLSKVPVSNIRNFSIIAHIDHGKSTLADKLLQVTGTVPQREMKEQFLDNMDLERERGITIKLQAARMRYVFENKPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALANNLEIIPVLNKIDLPGAEPDRVIKEIEEVIGLDCSNAILCSAKEGIGIMEILNEIVAKVPPPADTSKRPLRALIFDSYYDPYRGVIVYFRVVDGTIKKGDRVTFMASGKDYFADEIGVLSPNQLQAEELFAGEVGYLSASIRTVADARVGDTITHHLKKADSSLPGYEEATPMVFCGLFPVDADEFPDLRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVTCINGDTVECSNPSLLPEPGKRKSIEEPVVKIEMLTPKDYIGPLMELAQERRGQFKEMKFITEIRASLTYELPLAEMVGDFFDQLKSRSKGYASMEYTVIG* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1348 589 Gene3D - 482 589 - -
Psa5g1348 589 SUPERFAMILY EF-G C-terminal domain-like 513 587 IPR035647 -
Psa5g1348 589 CDD EF4_II 305 390 - -
Psa5g1348 589 PANTHER TRANSLATION FACTOR GUF1, MITOCHONDRIAL 107 587 - -
Psa5g1348 589 Hamap Elongation factor 4 [lepA]. 114 589 IPR006297 GO:0005525
Psa5g1348 589 Pfam Elongation factor Tu domain 2 319 389 IPR004161 GO:0005525
Psa5g1348 589 Pfam Elongation factor G C-terminus 513 587 IPR000640 -
Psa5g1348 589 TIGRFAM lepA: elongation factor 4 118 588 IPR006297 GO:0005525
Psa5g1348 589 SUPERFAMILY EF-G C-terminal domain-like 406 484 IPR035647 -
Psa5g1348 589 PRINTS GTP-binding elongation factor signature 121 134 IPR000795 GO:0003924|GO:0005525
Psa5g1348 589 PRINTS GTP-binding elongation factor signature 164 172 IPR000795 GO:0003924|GO:0005525
Psa5g1348 589 PRINTS GTP-binding elongation factor signature 188 198 IPR000795 GO:0003924|GO:0005525
Psa5g1348 589 PRINTS GTP-binding elongation factor signature 204 215 IPR000795 GO:0003924|GO:0005525
Psa5g1348 589 PRINTS GTP-binding elongation factor signature 240 249 IPR000795 GO:0003924|GO:0005525
Psa5g1348 589 TIGRFAM small_GTP: small GTP-binding protein domain 120 290 IPR005225 GO:0005525
Psa5g1348 589 Pfam Elongation factor Tu GTP binding domain 118 295 IPR000795 GO:0003924|GO:0005525
Psa5g1348 589 Gene3D - 116 299 IPR027417 -
Psa5g1348 589 CDD EF4_III 407 482 - -
Psa5g1348 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 315 IPR027417 -
Psa5g1348 589 SUPERFAMILY Translation proteins 279 392 IPR009000 -
Psa5g1348 589 Gene3D Elongation Factor G (Translational Gtpase), domain 3 400 481 - -
Psa5g1348 589 PANTHER TRANSLATION FACTOR GUF1-RELATED 107 587 IPR006297 GO:0005525
Psa5g1348 589 CDD LepA 120 297 - -
Psa5g1348 589 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 157 172 IPR031157 -
Psa5g1348 589 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 117 298 IPR000795 GO:0003924|GO:0005525
Psa5g1348 589 Gene3D Translation factors 300 399 - -
Psa5g1348 589 CDD lepA_C 515 589 IPR035654 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1348 Psa-Chr5 105189766 105198842 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1348 118 329 Eukaryotic Initiation Factors Gene Family AT3G22980 35.556 3.05e-26 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1348 K21594 - gmx:100784073 936.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1348 5 105189766 105198842 Psa5g1348 5 105189766 105198842 ECH