Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1343 ATGGATAAGTACGAGGCTGTTAAGGATTTGGGTTCTGGCAATTTTGGGGTTGCTAGGCTTATGAGAGACAAAGTTACAAAGGAACTTGTCGCCATGAAATACATCGAGCGTGGCCACAAGATTGATGAGAACGTGGCTAGAGAGATCATGAATCACAGGTCTCTTCGGCATCCGAATATAATTCGATTCAAGGAGGTGATTTTGACTCCAACACATTTAGCAATAGTTATGGAGTATGCAGCTGGAGGAGAGCTTTTTGAGAGGATATGTAATGCTGGAAGGTTCAGTGAAGATGAGGCCAGGTATTTCTTTCAGCAGCTGATCTCAGGTGTCCATTTCTGTCATACCATGCAAATATGCCACAGAGATCTGAAGCTAGAGAATACTCTTTTAGATGGAAGTCCTGCACCCCGCTTAAAAATTTGTGACTTTGGTTATTCCAAGTCATCTTTGCTCCATTCACGTCCCAAATCAACGGTTGGAACACCGGCGTATATAGCACCAGAGGTTCTTTCTAGGAGGGAGTATGATGGAAAGATGGCTGATGTATGGTCATGTGGGGTGACACTTTATGTGATGCTGGTCGGAGCATATCCGTTTGAGGACCAGGATGACCCTAAAAATTTTAGGAAAACAATTCAGCGTATAATGGCCATTCAATACAGAATTCCTGATTATGTTCACATATCTCAAGATTGCAGACACCTTATCTCTCGGATATTTGTTGCAAATCCATTGAGGAGAGTTAATATTAGAGAAATCAAGAGCCACCCATGGTTTTTAAAGAATCTTCCAAGGGAGCTAACAGAATCAGCTCAAGCTATGTACTACCAGAGGGAAAATCCAAGCTTTCACCTACAAAGCGTGGACGATGTGATGAAAATCGTGGGAGAGGCAAGAAACCCGCCTCCAATATCTAGGCCCATCAAAGGTTTTGGCTGGGAAGGCGAAGAAGATGAAGAAGCAGAAGATTTGGAAGCAGAGTTGGAAGAGGAAGTTGAAGAAGATGAGTACGATAAGAGGGTCAAAGAGGTTCATGCAAGTGGAGAATTCCATATCAGTTAA 1065 0.4291 MDKYEAVKDLGSGNFGVARLMRDKVTKELVAMKYIERGHKIDENVAREIMNHRSLRHPNIIRFKEVILTPTHLAIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVHFCHTMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKMADVWSCGVTLYVMLVGAYPFEDQDDPKNFRKTIQRIMAIQYRIPDYVHISQDCRHLISRIFVANPLRRVNIREIKSHPWFLKNLPRELTESAQAMYYQRENPSFHLQSVDDVMKIVGEARNPPPISRPIKGFGWEGEEDEEAEDLEAELEEEVEEDEYDKRVKEVHASGEFHIS* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1343 354 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Psa5g1343 354 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g1343 354 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2A-RELATED 2 348 - -
Psa5g1343 354 Gene3D Transferase(Phosphotransferase) domain 1 80 267 - -
Psa5g1343 354 SUPERFAMILY Protein kinase-like (PK-like) 1 295 IPR011009 -
Psa5g1343 354 Coils Coil 315 339 - -
Psa5g1343 354 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g1343 354 MobiDBLite consensus disorder prediction 310 341 - -
Psa5g1343 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Psa5g1343 354 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Psa5g1343 354 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g1343 354 CDD STKc_SnRK2 3 259 - -
Psa5g1343 354 MobiDBLite consensus disorder prediction 316 335 - -
Psa5g1343 354 PANTHER SERINE/THREONINE KINASE 2 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1343 Psa-Chr5 104800478 104805722 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1343 3 263 CBL-interacting serine-threonine protein kinases AT2G26980 41.544 9.23e-66 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Psa5g1343 Pkinase 2.9e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1343 K14498 - gmx:547811 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1343 5 104800478 104805722 Psa5g1343 5 104800478 104805722 ECH