Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1338 ATGAATTTTGGTTTTTTCTTCATTTTTCTTATTCTCCTTGCTTCTGAGATGGTGATACAAATCGAGGGAACACATTGTGAGTTGAAGAGTTATCAGTTTCAAGGGATTTGTTTTAGTGATCGCAGTTGTGCTAAAGTTTGTAATGTTGAAGGTTATATTGCAGGTGGTAAATGCAGAGGATTCTTTAGTCACTGCTATTGCAAAAGAGTTGTTAACATAAATAGTGCTAATGTGTACTCTAGCATCTATTTTTAG 255 0.3412 MNFGFFFIFLILLASEMVIQIEGTHCELKSYQFQGICFSDRSCAKVCNVEGYIAGGKCRGFFSHCYCKRVVNINSANVYSSIYF* 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1338 84 PANTHER DEFENSIN-LIKE PROTEIN 1 2 69 - -
Psa5g1338 84 Pfam Gamma-thionin family 25 69 - -
Psa5g1338 84 PRINTS Purothionin signature 25 40 IPR008176 GO:0006952
Psa5g1338 84 PRINTS Purothionin signature 56 70 IPR008176 GO:0006952
Psa5g1338 84 SUPERFAMILY Scorpion toxin-like 25 69 IPR036574 -
Psa5g1338 84 PANTHER DEFENSIN 2 69 - -
Psa5g1338 84 CDD Knot1 35 67 IPR003614 GO:0006952
Psa5g1338 84 Gene3D - 19 81 IPR036574 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1338 Psa-Chr5 104632239 104633045 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1338 3 70 Plant Defensins Gene Families AT5G63660 44.118 3.72e-15 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1338 - - pvu:PHAVU_009G158100g 90.1225