Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1310 ATGGATCCAGACGCATTCACCGCCAGCTTGTTCAAGTGGGACCCACGCACCGTTCTCTCTACTGCACCATCTCCCCGTCCCCAGCTTCTTGACTACGCGGTTACCCCTACAACCGCCCCGATGACTTATCATCCAGCGAGATTACCAAGAGAACTAGGAGGCTTGGAGGAACTTTTCCAAGCTTACGGGATCAGATACTACACGGCGGCGAAGATAGCAGAGCTTGGTTTCACGGTGAGCACGCTGGTGGACATGAAGGATGACGAACTTGACGACATGATGAACAGCCTCTCCCAGATTTTTCGCTGGGATCTTCTCGTCGGCGAACGTTACGGCATCAAAGCCGCCATCAGAGCTGAAAGAAGGCGCCTGGATGAAGAAGAAATTAAACGCCGCGGTCTTCTCTCCGGCGATACCACCAACGCTCTTGATGCTCTCTCTCAAGAAGGTTTGTCGGAGGAGCCGGTGGTGCAACGTGAAAAGGAAGCGATGGGGAGTGGAGGAGGGAGCACGTGGGAGGTGGCTGTGGTGGAGGAGAGGAGAAAGAGGCAGCAGATAAGGAGGCGGAGGATGAAGATGAAGGGGAATGATCATGGTGAGAATGAAGAAGGAGAAGAGGAGGAAGAGGATAACATTAGTGGCGGCGGTGTTGGTGGTGGTGAGAGGCAAAGAGAACATCCATTCATTGTGACGGAGCCTGGGGAAGTGGCACGTGGCAAAAAGAACGGTCTGGATTACCTCTTCCATCTCTACGAACAATGCCGTGAGTTTCTCATTCAAGTTCAAGCCATCGCTAAAGAGCGCGGTGAGAAATGCCCCACCAAGGTGACAAACCAAGTGTTTAGGTATGCAAAGAAAGCTGGAGCGAGTTACATAAACAAGCCGAAAATGAGACACTATGTTCACTGTTACGCATTGCATTGTTTAGATGAGGAAGTATCGAATGAACTTAGGAGAGGTTTTAAGGAAAGAGGTGAGAACGTTGGCGCGTGGAGGCAAGCATGTTATAAGCCACTTGTGGCGATTGCTGCACGTCAAGGATGGGATATTGATGCAATATTCAACGCGCATCCACGTCTTTCGATATGGTACGTGCCTACCAAACTCCGGCAGCTTTGTCACGCGGAGAGGAACGGTGCTGCTGCTTCAAGCTCCGTGTCTGTTGGAACTACCCACCTTCCTTTCTAA 1188 0.5143 MDPDAFTASLFKWDPRTVLSTAPSPRPQLLDYAVTPTTAPMTYHPARLPRELGGLEELFQAYGIRYYTAAKIAELGFTVSTLVDMKDDELDDMMNSLSQIFRWDLLVGERYGIKAAIRAERRRLDEEEIKRRGLLSGDTTNALDALSQEGLSEEPVVQREKEAMGSGGGSTWEVAVVEERRKRQQIRRRRMKMKGNDHGENEEGEEEEEDNISGGGVGGGERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQAIAKERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNELRRGFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVPTKLRQLCHAERNGAAASSSVSVGTTHLPF* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1310 395 Gene3D Protein LEAFY 218 387 IPR038276 -
Psa5g1310 395 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 215 381 IPR035209 GO:0003677
Psa5g1310 395 PANTHER PROTEIN LEAFY 1 395 IPR002910 GO:0003677|GO:0006355
Psa5g1310 395 MobiDBLite consensus disorder prediction 185 223 - -
Psa5g1310 395 MobiDBLite consensus disorder prediction 147 170 - -
Psa5g1310 395 Pfam Floricaula / Leafy protein SAM domain 51 128 IPR035079 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1310 1 389 Orphan Transcription Factor Family AT5G61850 64.951 3.78e-159 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Psa5g1310 C_LFY_FLO 4e-110 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1310 - - gmx:100798196 634.409