Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1302 ATGAATAATAGGAGAGAATCATGGGAGGAAGAGGGAAAAGAAGATGAGAATTTGTTTCCAGTGTATTCTGAAAGGTCACAGCAAGATATGTCAGCCATAGTTTCTGCACTGACACAAGTCATGGGAGGTAACAACAACAATGAACTTCAAGAAGCTTCCTCAATCCATAATATTAATGAACAATCTCAACAACCACAACAAGATCAAGGGAGTGAAAGAAAGAGACACTATAGAGGAGTGAGGCAGAGGCCATGGGGAAAATGGGCTGCAGAGATTCGCGATCCGAAGAAGGCGGCAAGAGTATGGCTTGGAACTTTTGAAACTGCTGAGGCTGCAGCTGTTGCCTATGATGAAGCTGCACTTAGATTCAAAGGAAGCAAAGCTAAGCTCAATTTTCCTGAAAGAGTTCAAAGTTCAGCAGAATTTGGATTTCATCATTTTGTTTCATCCACAAATAACCAGCAACAGTCTAACTCAGTTCCTCTTCCACACTTTTCTCAAGAAGCATATTCAAATCCTTATCAATATGCTGCTGCACAAGCGCAACTTCAAGGTGGTGGTGGTAGCAACTTCAATCAGGACATGCTTCGTTATTATGGGGGAGACATGTATGTTTCTAATCCTCAGCACTTATCATCTACATCTCCGTCTTCGTCTTCATCCTCGGCTTCTGGATTATCTCAGCAGCAACAAGAGTTTCTGAGATTGTCTATGCAATTTGGAGGTTCTTCTTCCGCTTCTCAGCCACCAAGGAATTGGAGAGATGACATGGATGGGAGACACTAA 786 0.4249 MNNRRESWEEEGKEDENLFPVYSERSQQDMSAIVSALTQVMGGNNNNELQEASSIHNINEQSQQPQQDQGSERKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEAAAVAYDEAALRFKGSKAKLNFPERVQSSAEFGFHHFVSSTNNQQQSNSVPLPHFSQEAYSNPYQYAAAQAQLQGGGGSNFNQDMLRYYGGDMYVSNPQHLSSTSPSSSSSSASGLSQQQQEFLRLSMQFGGSSSASQPPRNWRDDMDGRH* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1302 261 MobiDBLite consensus disorder prediction 1 20 - -
Psa5g1302 261 MobiDBLite consensus disorder prediction 210 261 - -
Psa5g1302 261 ProSiteProfiles AP2/ERF domain profile. 76 133 IPR001471 GO:0003700|GO:0006355
Psa5g1302 261 MobiDBLite consensus disorder prediction 44 82 - -
Psa5g1302 261 MobiDBLite consensus disorder prediction 210 251 - -
Psa5g1302 261 MobiDBLite consensus disorder prediction 44 68 - -
Psa5g1302 261 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Psa5g1302 261 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Psa5g1302 261 PANTHER DNA-BINDING DOMAIN 23 243 IPR044808 GO:0003700|GO:0009873
Psa5g1302 261 Gene3D AP2/ERF domain 75 135 IPR036955 GO:0003700|GO:0006355
Psa5g1302 261 SUPERFAMILY DNA-binding domain 76 134 IPR016177 GO:0003677
Psa5g1302 261 MobiDBLite consensus disorder prediction 1 24 - -
Psa5g1302 261 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 23 243 - -
Psa5g1302 261 CDD AP2 76 134 IPR001471 GO:0003700|GO:0006355
Psa5g1302 261 SMART rav1_2 76 139 IPR001471 GO:0003700|GO:0006355
Psa5g1302 261 Pfam AP2 domain 76 125 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1302 Psa-Chr5 100097638 100098593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1302 17 167 AP2-EREBP Transcription Factor Family AT5G61890 58.385 2.00e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Psa5g1302 AP2 4.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1302 - - gmx:100787091 254.603