Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1280 ATGTCAAGACCGTCGATTCTTATTGCTGATTTGAAGCTTGAACAGAACATTTGGGAACTTGCTATTCGCATTGTCAATCTATGGATCGTTAAGGAACGCAACAGACAACAACATGTTGAGGCTATTATACAAGATGCAAAGGGTGACCAAATCCACATCGTTACCCTCTGTGACAACAAACTCAAGCTTTTTATCAATTCTGGTACTGCTATTACAACCATTGACATCCAAGACATTCCACATCACAATTTCAATTTCAAGCCATTTGAAGATTTCTTAAATGGTGTTTTTGATGTTGATCAATTATATGATGTCATTGGTGTTGTCCAACAAATTCAGAGGACCCAAGTAGCAGGAGCTGGAAAAAAACCTTATGTAAATCTTACACTGTATGATGAATGTAGGACTGAAATTGATGTTACACTTTGGAAGACATTCGCCAACCAATTTATGGATTTCACATCTGACAATGGACCAATAATTGTCATACTAACTCATTCTTGGTGTCGCCAAAGTTCATGTTTCAAGATGGTAGGCCATCTCTAG 546 0.3755 MSRPSILIADLKLEQNIWELAIRIVNLWIVKERNRQQHVEAIIQDAKGDQIHIVTLCDNKLKLFINSGTAITTIDIQDIPHHNFNFKPFEDFLNGVFDVDQLYDVIGVVQQIQRTQVAGAGKKPYVNLTLYDECRTEIDVTLWKTFANQFMDFTSDNGPIIVILTHSWCRQSSCFKMVGHL* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1280 181 Pfam Replication protein A OB domain 99 163 IPR031657 -
Psa5g1280 181 Gene3D - 77 172 IPR012340 -
Psa5g1280 181 SUPERFAMILY Nucleic acid-binding proteins 83 164 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1280 Psa-Chr5 98673502 98674660 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1280 79 163 Core DNA Replication Machinery Family AT5G61000 33.333 5.14e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1280 K07466 - gmx:102661204 81.2629