Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1279 ATGGATAGTGCTGTATCTGTACTATGGTTTTTACTACTTTTCTTTCTTCTGTCTTTCTTTTCCTCTGAATCCAAATTCATCAGATACAATACTAATTCAACCATTCTTCCTGGGAAGCTCAATGTTCACTTGGTTCCTCACTCTCACGACGATGTTGGATGGTTGAAAACCGTTGATCAGTACTATGTTGGTTCCAACAACTCCATTCAGGGAGCTTGCGTTCAAAATGTGCTTGATTCCCTTATACCGGCTTTGTTGGCAGACAAGAATCGTAAATTCATCTATGTTGAACAGGCATTCTTCCAGCGTTGGTGGAGAGAGCAGGATGAACTTGTTCAGAAAACAGTCAAGCAGCTGGTCAACTCTGGTCAATTGGAGTTCATAAATGGTGGTATGTGTATGCATGATGAGGCGGCTACGCATTATATTGACATGATTGATCAGACAACCCTTGGACATCGATTCATCAAAGATGAGTTCGGCGTGACTCCGAGAATAGGATGGCAAATCGATCCGTTTGGACATTCTGCGGTGCAGGCCTACTTGTTGGGAGCAGAGGTTGGATTTGATTCTTTATTCTTTGGACGGATCGACTACCAAGATCGAGCCAAGAGAAAAGGCGAAAAAAGTCTTGAGGTTGTGTGGCAGGGCTCTAAGAGCTTTGGTTCGTCTGCACAGATATTTTCTGGCGCATTCCCGGAGAATTATGAACCTCCTACAAGTAATTTCTACTTTGAAGTAAATGACGAATCTCCAATTGTTCAGGACGATATCAATTTGTTCGATTACAATGTCCCTGATCGAGTAAATGATTTTGTCTCAGCTGCAATATCACAGGCCAATATAACGCGCACAAATCATATAATGTGGACAATGGGGACAGATTTCAAGTACCAATACGCGCAAACCTGGTTCAGGCAACTAGACAAGTTTATTCATTATGTTAATCAGGACGGACGGGTTCACGCGTTATACTCAACCCCGTCAATATATACTGATGCAAAACACGCTGCAAACGAAGTCTGGCCAATCAAGACCGATGACTTCTTTCCGTATGCAGATCGTGTAAATGGTTACTGGACGGGGTATTTTACAAGTAGGCCAGCACTCAAAGGTTATGTTAGATTTGTGAGTGGCTACTACTTGGCAGCAAGGCAGTTGGAGTTTTTCAAAGGGAAGAGTGCCTCGAGTCCTAATACTGACTCTTTGGCTGATGCTTTGGCTATTGCTCAACACCATGATGCGGTATCTGGTACAGAAAAACAGCATGTGGCTAATGATTATGCCAAACGGCTTTCAATAGGTTACACAGAGGCCGAGAAAGCTGTTGCTGCATCACTTGTTTTCTTGACAGAAGCAGCAAACAAAACCGATGGTAGGACTCCACAAATTAAATTTCAACAGTGTCCACTTCTTAACATAAGTTACTGTCCTGCATCAGAAGCAGACTTCTCCGATGGGAAAGACCTGGTTGTCGTCGTTTACAATCCTCTTGGACGGAAAAGAGAGGATATTATAAGGATTCCTGTTGCCAATGAAAATGTTGTTGTTCGGGATTCGAGTGGGAAAGAAATCCAATCCCAGCTTCTGCCAATACCTGATGCTTTTCTTGGTTTAAGAAACTACTACGCGGAAGCATACCTAGGAGTTTCTCCAAGTGAAACTCCTAAATATTGGCTTGCTTTTTCAGCCATTGTTCCCCCACTTGGTTTTAGCACTTACTACGTGTCAAAAGCTAAACAAGCAGCTACTATTTCAGATAGCCATATAGAACATAGATCAGGGAGTCCGAGCGATACGTTTGAAGTAGGCCTAGGAAACTTGAAACTTATTTACTCAGGGAAGGAAGCGAAACTTACTCAATATATTAACAGAAAAAGGAAGGTCAAAGAATCGCTAGATCAGACGTACAAGTTTTATGCCTCGTATGGAAACGACTTTACAGATAATGCTCAGGCATCTGGAGCATATATTTTTCGTCCCAATGGTTCATCAATTCCCATCAATTCCAACAAGAAGTCTCCTCTCACAGTTTTGAGGGGACCAATCGTGCATGAAGTGCATCAGAAGATCAATTCATGGATATACCAGACCACAAGACTATTCAAAGGAAAAGAACATGCTGAAGTTGAGTTTATTGTTGGGCCTATACCGATTGACAACGGAGTTGGCAAAGAAATTGCAGCCGAGATTAAAACAAATCTAGCAAGCAGCAAAACCTTCTATACTGATTCTAATGGACGCGATTTCCTTGAACGGGTTCGAGACTATAGAAAAGACTGGAACTTGGAAGTAAATCAACCTGTTGCAGGAAATTATTATCCAATCAATCTTGGAATTTACCTAAAAGATAAACAAAGCGAGTTTTCTGTATTGGTAGATAGGTCTGTAGGCGGTTCCAGCATCCAAGATGGACATGTGGAGCTAATGGTTCATAGGAGGTTACTTAATGATGATTCCAGAGGTGTTGCAGAGAATCTAAATGAAACAGTTTGCGTCTCTAATAAGTGCGCCGGGTTAACAGTTTTAGGGAAGTACTATTTCAGAATTGATCCTGTTGGAGAGGGTGCTAGATGGCGTCGAACATTTGGTCAAGAAATATACTCACCGTTGCTTTTAGCCTTCACAGAGAGCGAAGGTAACTGGGGAGATTCTCATGTCACAACATTCTCGGGAATAGATTTGTCATACCGCTTACCGGAAAATGTTGCAATAATAACTCTCCAGGATCTTGGTAAGGGAGAAGTTCTTCTTCGCCTGGCGCACTTATTTGAGATTGGCGAGGACGTGAATCTTTCGGTTAAGTCAAGCGTAGAACTTAAAAAAGTGTTCGGCAATAAACAGATAAACAAAGTAACCGAGGCGAGCTTATCAGCAAACCAAGAAAGAACAGAAATGGAGAAGAAGAGGTTAGTGTGGCAAGTTAAAGGATCATCTCCGGAACCGAAGCTTCAGGGCTTGGAAGAAAATGCAGAATCGTTACGCTCAAGATGTTGGAAGTTTTTCAAAGGATGTCGAAAGTACACGGAAGGGCTTGGAGAGGCTTATGATGGAGACATTGCATTTGCAACTGCCCTTGAAAGTTTTGGAGGAGGCCAGAGTGATCCTCTTTTTGTAACTTTGGGAGGACCTGTAATGACCAAATTCGCCATTGCTTTGAGAGAAATCAGTACACACAAGGAACTTCTTCGGTCACAGGTGGAGCATATGCTGAATGACCGGTTACTGAACATCCTAAATGTCGAAATCATTGATGTCAAGGAAGCTCGGAGGCGTTTTGATAAAGCTTCCCTTGTATATGATCAGGCACGTGAGAAGTTTATGTCATTGAGAAAAAGCACCAAGTTTGATGTTGCCGCTGTCATAGAAGAGGAATTGCACAATGCAAGAACAATATTTGAAGAAGCTCGTTTCAATCTGGTTGGTGCTCTTCATAATATTGAGGCCAAGAAGAGATTTGAGTTTTTGGAGGCTGTCACTGGAGTTATGGACGCTCATCTTCGATACTTTCAACAGGGATATCGGCAGTTGCAGGAGCTGGAGCCTTTCATTATTGAGGTTTTGGCTTATGCACAAAAAGCAAGAGAAAGTTACAATGAGGAGCAGATTTCTCTTTGTGAAAGAATGGTAGAATACAAAAAACTAAGTTATCAAGAAAGTAGGTTCTCCTTAAATGGCCCTTATGGTTCTCCGAGTGGAGAAGGTGCGCATATGCATCCTTTTTCTAGGATATCGAACAGTGTTGTAGATGTAGTAGCTGAATCAGCTGCAAGTGGAAAGGTTCTAGTCATTCGACAAGGGTATCTTTCAAAACGTTCCTCCAATTTGAGGGGTGACTGGAAGAGACGGTTTTTTGTTCTTGATACTCGTGGAATGCTTTACTACTATCGTAAATCATTACAAGCAAATAGTACCAATCAGCAATCTTCGCAGAGGAATTGTGCCAGTGAAAACAGTGCTGGCATTCTGAGTAAGTTGCTTTCTTCACAGTACCATGGAGTTATTCCTGATGAAAAATCGGTTGCACGCCACACAGTGAACCTGCTGACATCAACAATCAAGATCGATGCTGAGCAATCAGATTTAAGATTCTGCTTCAGGATTATTTCACCCTCAAAAATGTATACTTTGCAGGCAGAAAATGCCCTTGACCAGATGGATTGGATGGAAAAGATAAATGGTGTCATTGCCTCCTTGTTGTCTGTACAGACACTAGGTGGAAAGGCTACCTTAGCTGACTCAGAAAGCGCTGAAAGTGATTCTTCCAGTAACGTTGACTCATTACAAAGTTTACAAGATTACGATCTATTAGTGAGTGGGGAATTGGCACCCAAGAACTTCGCCACTAATAAATCATCTGAAGACGTACAGAAGAATAGACTGAGTGTAAAAGTTGAACAGCCCATTGATATTCTAAGAAAGGTTAGCGGTAATGACAAATGTGCTGATTGCGGTAAACCTGAACCAGACTGGGCATCCTTAAACCTTGGCATCCTTGTATGCATTGAATGTTCGGGTGTTCACCGTAATCTTGGTGTACATAAATCAAAAGTAAGATCACTGAAACTTGATGTCAAAGTGTGGGATTCATCCGTCTTAACTATGTTTCAGTCACTGGGAAATCTCTTTGGGAACTCGGTTTGGGAGGAGCTTTTGCACACAACAAGTAATCCACAAACTGATGAAACTCCATATGGGTGTTCACCCAAAGCTGCTAAAAACAAGTTATGTCATATAAAAAAACCAGAACATGATGATCCTATTTCAATTAAGGAGAAATTCATTCATGCAAAGTATTCTGAGAAAGTCTTTGTTCGACGGATGCCAAAAAGCCACCATCTTCTTTCAGTGGCGCAACAAGTTTTGGAATGCATCTATGCCAACGACAAGAAAGCTGTGTACCGGTATATTGTCAAGTCAGACGTGGACATCAATTCTGCTAGTGAAGAAGCATTATCCAGCCTTTTTTCCAACATGTCTTCATCAATTGATTCGAACACGTCTTCTACAAGTAAAGTTCAGCTAATGGAGGACATACAATTGGGTTCTAGCGTGCTTCACTTGGCCTGTCTAACAAGCGATGCTGGAATGATAGAGCTGCTACTACAGTATGGAGCCGATATAAATGCTATCGATTCAAGAGGTAGGACACCGCTGCATTACTGCATTTTGCGAGGGAAGAACGCAGCTGCAAAATTGCTTATTACAAGGGGTGCCAATCCACTTACTATAGATAAAGAAGGCAACACTCCTCTTAAGCTTGCACCAGAATCCGGCGCTATTGGAAAAGACATTCTTGCACTCTTAAGTTAA 5313 0.4188 MDSAVSVLWFLLLFFLLSFFSSESKFIRYNTNSTILPGKLNVHLVPHSHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSLIPALLADKNRKFIYVEQAFFQRWWREQDELVQKTVKQLVNSGQLEFINGGMCMHDEAATHYIDMIDQTTLGHRFIKDEFGVTPRIGWQIDPFGHSAVQAYLLGAEVGFDSLFFGRIDYQDRAKRKGEKSLEVVWQGSKSFGSSAQIFSGAFPENYEPPTSNFYFEVNDESPIVQDDINLFDYNVPDRVNDFVSAAISQANITRTNHIMWTMGTDFKYQYAQTWFRQLDKFIHYVNQDGRVHALYSTPSIYTDAKHAANEVWPIKTDDFFPYADRVNGYWTGYFTSRPALKGYVRFVSGYYLAARQLEFFKGKSASSPNTDSLADALAIAQHHDAVSGTEKQHVANDYAKRLSIGYTEAEKAVAASLVFLTEAANKTDGRTPQIKFQQCPLLNISYCPASEADFSDGKDLVVVVYNPLGRKREDIIRIPVANENVVVRDSSGKEIQSQLLPIPDAFLGLRNYYAEAYLGVSPSETPKYWLAFSAIVPPLGFSTYYVSKAKQAATISDSHIEHRSGSPSDTFEVGLGNLKLIYSGKEAKLTQYINRKRKVKESLDQTYKFYASYGNDFTDNAQASGAYIFRPNGSSIPINSNKKSPLTVLRGPIVHEVHQKINSWIYQTTRLFKGKEHAEVEFIVGPIPIDNGVGKEIAAEIKTNLASSKTFYTDSNGRDFLERVRDYRKDWNLEVNQPVAGNYYPINLGIYLKDKQSEFSVLVDRSVGGSSIQDGHVELMVHRRLLNDDSRGVAENLNETVCVSNKCAGLTVLGKYYFRIDPVGEGARWRRTFGQEIYSPLLLAFTESEGNWGDSHVTTFSGIDLSYRLPENVAIITLQDLGKGEVLLRLAHLFEIGEDVNLSVKSSVELKKVFGNKQINKVTEASLSANQERTEMEKKRLVWQVKGSSPEPKLQGLEENAESLRSRCWKFFKGCRKYTEGLGEAYDGDIAFATALESFGGGQSDPLFVTLGGPVMTKFAIALREISTHKELLRSQVEHMLNDRLLNILNVEIIDVKEARRRFDKASLVYDQAREKFMSLRKSTKFDVAAVIEEELHNARTIFEEARFNLVGALHNIEAKKRFEFLEAVTGVMDAHLRYFQQGYRQLQELEPFIIEVLAYAQKARESYNEEQISLCERMVEYKKLSYQESRFSLNGPYGSPSGEGAHMHPFSRISNSVVDVVAESAASGKVLVIRQGYLSKRSSNLRGDWKRRFFVLDTRGMLYYYRKSLQANSTNQQSSQRNCASENSAGILSKLLSSQYHGVIPDEKSVARHTVNLLTSTIKIDAEQSDLRFCFRIISPSKMYTLQAENALDQMDWMEKINGVIASLLSVQTLGGKATLADSESAESDSSSNVDSLQSLQDYDLLVSGELAPKNFATNKSSEDVQKNRLSVKVEQPIDILRKVSGNDKCADCGKPEPDWASLNLGILVCIECSGVHRNLGVHKSKVRSLKLDVKVWDSSVLTMFQSLGNLFGNSVWEELLHTTSNPQTDETPYGCSPKAAKNKLCHIKKPEHDDPISIKEKFIHAKYSEKVFVRRMPKSHHLLSVAQQVLECIYANDKKAVYRYIVKSDVDINSASEEALSSLFSNMSSSIDSNTSSTSKVQLMEDIQLGSSVLHLACLTSDAGMIELLLQYGADINAIDSRGRTPLHYCILRGKNAAAKLLITRGANPLTIDKEGNTPLKLAPESGAIGKDILALLS* 1771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1279 1770 CDD PH_ACAP 1265 1401 - -
Psa5g1279 1770 ProSiteProfiles Ankyrin repeat region circular profile. 1714 1740 - -
Psa5g1279 1770 ProSiteProfiles Ankyrin repeat region circular profile. 1681 1712 - -
Psa5g1279 1770 PRINTS HIV Rev interacting protein signature 1478 1497 IPR001164 GO:0005096
Psa5g1279 1770 PRINTS HIV Rev interacting protein signature 1497 1514 IPR001164 GO:0005096
Psa5g1279 1770 PRINTS HIV Rev interacting protein signature 1520 1541 IPR001164 GO:0005096
Psa5g1279 1770 Coils Coil 1086 1106 - -
Psa5g1279 1770 PANTHER ALPHA-MANNOSIDASE 18 967 - -
Psa5g1279 1770 SMART arf_gap_3 1466 1612 IPR001164 GO:0005096
Psa5g1279 1770 Pfam PH domain 1263 1396 IPR001849 -
Psa5g1279 1770 Pfam Putative GTPase activating protein for Arf 1469 1606 IPR001164 GO:0005096
Psa5g1279 1770 ProSiteProfiles Ankyrin repeat profile. 1714 1746 IPR002110 GO:0005515
Psa5g1279 1770 Gene3D Arfaptin homology (AH) domain/BAR domain 982 1218 IPR027267 -
Psa5g1279 1770 SUPERFAMILY Galactose mutarotase-like 463 973 IPR011013 GO:0003824|GO:0005975|GO:0030246
Psa5g1279 1770 SUPERFAMILY PH domain-like 1173 1396 - -
Psa5g1279 1770 CDD BAR_SFC_plant 983 1183 IPR035670 -
Psa5g1279 1770 CDD GH38N_AMII_LAM_like 40 317 - -
Psa5g1279 1770 SUPERFAMILY BAR/IMD domain-like 984 1285 IPR027267 -
Psa5g1279 1770 Gene3D Arf GTPase activating protein 1446 1611 IPR038508 -
Psa5g1279 1770 Gene3D - 480 595 IPR013780 -
Psa5g1279 1770 SUPERFAMILY Ankyrin repeat 1626 1759 IPR036770 -
Psa5g1279 1770 ProSiteProfiles ARF GTPase-activating proteins domain profile. 1466 1612 IPR001164 GO:0005096
Psa5g1279 1770 Gene3D Glycoside hydrolase family 38, central domain 322 400 IPR037094 GO:0004559|GO:0006013
Psa5g1279 1770 ProSiteProfiles Ankyrin repeat profile. 1681 1713 IPR002110 GO:0005515
Psa5g1279 1770 Pfam Glycosyl hydrolases family 38 C-terminal domain 607 821 IPR011682 GO:0004559|GO:0006013
Psa5g1279 1770 Gene3D Glycoside hydrolase 38, N terminal domain 40 321 IPR027291 -
Psa5g1279 1770 SUPERFAMILY Families 57/38 glycoside transferase middle domain 357 451 IPR028995 -
Psa5g1279 1770 SMART ANK_2a 1681 1710 IPR002110 GO:0005515
Psa5g1279 1770 SMART ANK_2a 1714 1743 IPR002110 GO:0005515
Psa5g1279 1770 Pfam Glycosyl hydrolases family 38 N-terminal domain 41 353 IPR000602 GO:0004559|GO:0006013
Psa5g1279 1770 SMART PH_update 1263 1399 IPR001849 -
Psa5g1279 1770 Gene3D - 1257 1406 IPR011993 -
Psa5g1279 1770 ProSiteProfiles PH domain profile. 1262 1397 IPR001849 -
Psa5g1279 1770 Pfam BAR domain of APPL family 983 1201 - -
Psa5g1279 1770 Gene3D Glycoside hydrolase family 38, central domain 401 456 IPR037094 GO:0004559|GO:0006013
Psa5g1279 1770 CDD ArfGap 1469 1599 - -
Psa5g1279 1770 Gene3D - 601 869 - -
Psa5g1279 1770 SUPERFAMILY ArfGap/RecO-like zinc finger 1466 1608 IPR037278 -
Psa5g1279 1770 SMART Alpha_mann_mid_2 358 432 IPR015341 GO:0004559|GO:0006013
Psa5g1279 1770 Pfam Alpha mannosidase middle domain 359 447 IPR015341 GO:0004559|GO:0006013
Psa5g1279 1770 SUPERFAMILY Glycoside hydrolase/deacetylase 29 354 IPR011330 GO:0005975
Psa5g1279 1770 PANTHER ALPHA-MANNOSIDASE 18 967 - -
Psa5g1279 1770 Gene3D - 1612 1770 IPR036770 -
Psa5g1279 1770 SMART 5bar 946 1186 IPR004148 GO:0005515|GO:0005737
Psa5g1279 1770 Pfam Ankyrin repeats (3 copies) 1686 1760 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1279 Psa-Chr5 98583719 98595961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1279 1 925 Glycoside Hydrolase AT5G13980 67.777 0.0 1332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1279 K01191 - gmx:100798150 1671.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g0898 7 68179886 68201134 Psa5g1279 5 98583719 98595961 PCT