Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1278 ATGAACAACAACAACAACAATTGTTGGATTCAAGAAAAAGAAAGTGAAAACATCACTACTGCACCTTCATCATGGCCTAATGCAAACCCAAACACTCCTTCATCTGCTTCTACTTTTCTCCCAAACAAGCAACATTTCGCTGATTTCCAAACCATGCTTATCGACAATGATGATGAATGGTACATGAAAGACATGGCTTTTCCACCTAACTTAGATGCCGTTTTACTCAACACCGTTGATTCTGTTTCTTCCTCTTCGGGTTCACCTTCTTCCACCGTTTTCAACGCACTTGATCCTTCACTGTCGAATCTTCAGTATTTTCTTTCTCAAAATACTAAACCCGATGACTCCCTTTCTTCTCTTCTCAACAACCCTTTTGAGATTCCATGTGAAGCTGGTTTTCTTGAACCTCAAGGTTCAGCATTACCTCCTTCTCCAAATATGGGTAGTTTGGTTGATTTCACAGCGGTAGAGATGAGCTTGCCCCATTTGCCTCAAACTAACAATGGCTTCATGGGGTTTCAGAACTCGGAAGAGGGTTCTGGAAAGTCGCTGTTTTCGAACAGGCCCAAGGTTTTGAGACCCCTTGATTCTTTGCCTCCTTCTGGAACACAGCCTACTCTGTTTCAGAAGAGAGCTGCACTCAGAAAAAACATGGGCAAGGGCGAAATTGGGGAAGGGAGTGATATGAAAAGGAAGTTCAGTGGTGGAGATGAAATTGAAGATTTGAGTTTTGATTGGTCTGGTTTGAACTGTGATTCTGATGATTTGACTGAGGGTAATGGCAAAAACCGTGGAAATGCTTCCAAAGGTAACAGCACTGTTACTGTTCAGAAAGGGAAGAAGAAAGGAATGCCTGCTAAGAATTTGATGGCCGAGCGTCGCCGCAGGAAGAAGCTCAATGATAGACTCTATATGCTGAGGTCTGTTGTTCCAAAGATTAGCAAAATGGATAGGGCTTCAATTCTTGGGGATGCAATTGAGTATTTGAAGAAACTTCTGCAAAGGATCAATGACCTTCATAATGAGTTGGAGTCAACACCTGCTGGATCTTCACTAACACCTGCTTCAAGCTTCCATCCGTTGACACCGACTCCGTCTTCGATGCCGAGGAGCCTCATCAAAGAAGAACTATGTCCCAGCTCATTGCCAAGCCCCAATGGCCAACCTGCCAGGGTTGATGTTCGCTTACGGGAAGGAAGAGCCGTAAATATCCACATGTTTTGTGCTCGCAAACCTGGTCTGTTACTCTCAACCATGAGGGCTATGGATAGCCTTGGATTAGACATTCAGCAAGCTGTCATAAGCTGTTTCAACGGATTTGCTATGGACATTTTCAGAGCCGAGCAATGCAAAGAAGGTCAAGATGTTCATCCGGAGCAAATCAAAGCAGTACTGTTGGATTCAGCTGGTTTCAATGGCATGATCTGA 1431 0.4396 MNNNNNNCWIQEKESENITTAPSSWPNANPNTPSSASTFLPNKQHFADFQTMLIDNDDEWYMKDMAFPPNLDAVLLNTVDSVSSSSGSPSSTVFNALDPSLSNLQYFLSQNTKPDDSLSSLLNNPFEIPCEAGFLEPQGSALPPSPNMGSLVDFTAVEMSLPHLPQTNNGFMGFQNSEEGSGKSLFSNRPKVLRPLDSLPPSGTQPTLFQKRAALRKNMGKGEIGEGSDMKRKFSGGDEIEDLSFDWSGLNCDSDDLTEGNGKNRGNASKGNSTVTVQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKKLLQRINDLHNELESTPAGSSLTPASSFHPLTPTPSSMPRSLIKEELCPSSLPSPNGQPARVDVRLREGRAVNIHMFCARKPGLLLSTMRAMDSLGLDIQQAVISCFNGFAMDIFRAEQCKEGQDVHPEQIKAVLLDSAGFNGMI* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1278 476 PANTHER BHLH TRANSCRIPTIONAL FACTOR 96 476 - -
Psa5g1278 476 MobiDBLite consensus disorder prediction 259 285 - -
Psa5g1278 476 CDD bHLH_AtAMS_like 287 352 - -
Psa5g1278 476 Gene3D - 276 348 IPR036638 GO:0046983
Psa5g1278 476 SMART finulus 290 339 IPR011598 GO:0046983
Psa5g1278 476 Coils Coil 327 347 - -
Psa5g1278 476 CDD ACT_UUR-ACR-like 405 465 - -
Psa5g1278 476 Pfam Helix-loop-helix DNA-binding domain 291 333 IPR011598 GO:0046983
Psa5g1278 476 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 287 351 IPR036638 GO:0046983
Psa5g1278 476 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 96 476 - -
Psa5g1278 476 MobiDBLite consensus disorder prediction 259 279 - -
Psa5g1278 476 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 284 333 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1278 Psa-Chr5 98474233 98477302 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1278 39 449 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 52.055 2.54e-116 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa5g1278 HLH 2.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1278 - - vra:106778861 539.265