Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1277 ATGACATTCTTGAATGACTCAACCTCTTCCCCAAATGCTCATTATAGTCGACGCTATCATGTTTGCATTGCTGCTCCTCCTAATATTCTCTCTGACGGCATATGGGGAGATCACAAAATCGGAAAAAGTCCGTTAAAATCTTCTTTCCCGGTATTCCTTCTTCAAATGATTCTAATGTACACCATAACAAGAGCTTTAAATTTCCCTCTCAAGAAACTTGGTTTACCAGTCCTCCTTTCACAAATGATGACCGGGATAATTTTAGGACCAATGGTGCCGGTATTTGAGGAGTATAAAAAATTAGTGTTTCCCTATGGAAGTCAAGATACACTAGCAACAATATCAGCACTCGGTTATGTGTTCTTCTTATTCGAAACCGGTGTAAAAATGGATTTCAGCATGATTGTAAAAACGGGAAGAAAAGGATGGGCGATTTCGCTTTTCGGGGTAATAGCTCCTATGGTAATTGGTTTGTGTACCCGTCATTTTGCGATTAGGGGTGAATATGAAAATAGTCCTCTTGAAGGAGATGTAGTAATGGTAGGACACAATACAACTTCATTTGCAGTGATTGTTTCTCTTTTGAATGACCTTAAACTTCTAAACTCTGAACTTGGGAGATTAGCATTATCTGTCGCTTTGGTTGGCGACATATTCAGTAACATTATTGTAACTATTTCATCTACTATGATTAGTCACAATCAGGCTATTCCAATTAGCCTGAGGTTTGTATGTTTATTTGTCGTGGTTATCTTCATTTTGTTTATCTACCGTCCTGCCATGTCTTGGATTGTTGAACATACACCGGAAGGGAAAGAAGTTAAGGACATTTACGTCAACATTGTAATTGGGATTCTCTTTTTCTTGTGTTGGATTTCAGGACAAATAGAAAGAGGTCCTGTTTTTTTACCTTTTATTTTCGGATTGGCTACGCCTGCAGGACCTCCATTAGGATCCACCTTGATTAAAAGGGTTCATTTGTTGGGCATAAAATTGCTTTTGCCAATTTTCATGACTACTAGTACAATGAAGATGGAATATGGCTTCTGGAATTTAACAACATCTCCCACACTTGATATTATCTTGTTTGTTTTCTTTAGTGGTTATTTTGTCAAAATGGTTACATGCTATCTAGCTTCAGTCTTTTTCAAAATGCCTTTAAAAGACGGTATCGCTCTTGCCCTACTTTTGAACTGCAAAGGTGTTGTGGAAGTAACCATGTACTCTACTGCATTGGACAGAACTGATATTCGTTTGAAAACATTTTGTATAGTTATGATATTCATCATGATTTCAATCTGCGTGACTCCCTTGTTGGTAAAACACGCCTTACATTTAATCGAATTAGCGGGAAGGTCCTCGCCAATTTTCATTTCTCACAAGAAGAAGAAAGTTGTTGCTTTAAACATGTATGACTCTTATTCTGATAGTGTTGTTCTTAGTCTCAAACTATATGAACATGATAAACAAGGTGCAGCAATTATAAACCCTTACACTGCAATATCTCCTGTTAACTTGATGCATGAAGATATTTGTCACCTAGCATTGGACAAGGTTTCATCAATTATGATCCTTCCTTTTCATAAAAAATGGTCAAGTGATGGCAAAGTTGAATATGATGATATAAACATAAGGACTATAAACTGTAATGTGTTGGAAAAATCTCCATGCTCAGTTGGAATCTTAGTGAGCCGCGTAGTTCATCCAGCAGATTCGTCGCTTCGATTAGCCTTGGTGTTTTTTGGTGGAAGAGATGATAGAGAGGCTTTATGTTTGGCGAACCGGGCGGCACGAGACACTAGCATTGAGCTTGTGATATATCACATTGTAGACAAGAACAAAAGTGGAAAGGAAAGGCAGAATTTGGATACAATGCTTGATATAGCAATGTTAAAAGATGTTCAGGTAGAACAATCTAGAGTGGGAAATGTAAAATTAAGAGGAATAGAAGTGGAGGGTGGATCACAAACACTTGATGTTCTTCGTCAAATGGTAGATGAACATGATTTTATTATAGTTGGGAGAAGACATGGACTCGATTCTCATCAGACTTCTGGGCTTCAAGATTGGAGTGAGTTTCCTGAGTTGGGTCCTGTTGGAGATTATTTGGCTTCCTCAGATCTTGATTGCAAAGCATCAGTTTTAGTGGTGCAACAACAAATATGCCTATAG 2172 0.3785 MTFLNDSTSSPNAHYSRRYHVCIAAPPNILSDGIWGDHKIGKSPLKSSFPVFLLQMILMYTITRALNFPLKKLGLPVLLSQMMTGIILGPMVPVFEEYKKLVFPYGSQDTLATISALGYVFFLFETGVKMDFSMIVKTGRKGWAISLFGVIAPMVIGLCTRHFAIRGEYENSPLEGDVVMVGHNTTSFAVIVSLLNDLKLLNSELGRLALSVALVGDIFSNIIVTISSTMISHNQAIPISLRFVCLFVVVIFILFIYRPAMSWIVEHTPEGKEVKDIYVNIVIGILFFLCWISGQIERGPVFLPFIFGLATPAGPPLGSTLIKRVHLLGIKLLLPIFMTTSTMKMEYGFWNLTTSPTLDIILFVFFSGYFVKMVTCYLASVFFKMPLKDGIALALLLNCKGVVEVTMYSTALDRTDIRLKTFCIVMIFIMISICVTPLLVKHALHLIELAGRSSPIFISHKKKKVVALNMYDSYSDSVVLSLKLYEHDKQGAAIINPYTAISPVNLMHEDICHLALDKVSSIMILPFHKKWSSDGKVEYDDINIRTINCNVLEKSPCSVGILVSRVVHPADSSLRLALVFFGGRDDREALCLANRAARDTSIELVIYHIVDKNKSGKERQNLDTMLDIAMLKDVQVEQSRVGNVKLRGIEVEGGSQTLDVLRQMVDEHDFIIVGRRHGLDSHQTSGLQDWSEFPELGPVGDYLASSDLDCKASVLVVQQQICL* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1277 723 CDD USP_Like 582 717 - -
Psa5g1277 723 Gene3D - 50 450 IPR038770 -
Psa5g1277 723 PANTHER CATION/H + ANTIPORTER 16 442 - -
Psa5g1277 723 PANTHER CATION/H + ANTIPORTER 443 720 - -
Psa5g1277 723 Pfam Sodium/hydrogen exchanger family 57 440 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Psa5g1277 723 PANTHER CATION/H+ EXCHANGER 3 16 442 - -
Psa5g1277 723 PANTHER CATION/H+ EXCHANGER 3 443 720 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1277 Psa-Chr5 98412684 98415435 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1277 21 720 Antiporter Super Family AT5G22900 30.366 2.23e-109 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1277 - - mtr:MTR_3g498715 922.154