Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1272 ATGGCAGCTTTTTCATATCAATACAATCCTTTCCTTGTTGATCACTCACACTCACCATTCATGTGTCTTCCTCCTCCTTCACAACACTTTCATCCTCTTCATCAAGATATTATTAACTGTGTTGATCATCAAAGCTCCAAAATTACTACCGTCACTGAAAATGAACCTTCTTCTCTCACCAAAAATCTCAGTCCTCAGTCTTCCATGGTATTGGACAAGCTCGAAACCGGCGACGAGCAGGTTACTCAGAAAATTAACCCTATGGAGAAGAAGAGAAGAGCCAGAAATAATGGACCTTCCTCAACTAACCCTAAATCTCATGAAATTCCAGCAGAAGCGAGAAACAAAAAACAGAAGAAAAACAAGGAAGAGGAGAAGCCAAAAGATGAGAGAAAGTGTTTGGATGAGCCTCCAACTGGTTACATCCACGTCAGGGCAAGAAGAGGTCAGGCCACTGATAGCCACAGCCTTGCTGAAAGGGTAAGAAGAGAGAAAATCAGTGAAAGGATGAAGAAGTTGCAACAACTTGTGCCAGGCTGTGATAAGGTCACTGGAAAAGCCCTTATGTTAGATGAAATAATCAACTATGTTCAGTCTTTACAGAATCAAGTAGAGTTTTTATCAATGAAACTTACTTCTGTGAATCCTATGTTCTATGACATGGCAACAGATCTTGACACTTTCATGGTTAGACCAGAGAAATTAAATAACTTATCATCACCATCACCACCACTATCATCATCAGTGTCACATTGCAACAGTCCTAAACAAGGCGCAGCTTTTGCTGATACAACCACCATGACTCCAACCAACATTTTCCAAACTACTAATGACTATCTTTTGGATACTTCAGCTTCAATTTTTCTTCAAGGACAGAGATCAAATATTGTCTCTGAGGATGGTAGCCATTTTTGGGAGGTAGAAGAGCAACGACAAAAGTTTCTTAATTCACATGGATTCAACAACAACTTATGTTCATTTTCATTAATTTAA 993 0.3927 MAAFSYQYNPFLVDHSHSPFMCLPPPSQHFHPLHQDIINCVDHQSSKITTVTENEPSSLTKNLSPQSSMVLDKLETGDEQVTQKINPMEKKRRARNNGPSSTNPKSHEIPAEARNKKQKKNKEEEKPKDERKCLDEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKKLQQLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLTSVNPMFYDMATDLDTFMVRPEKLNNLSSPSPPLSSSVSHCNSPKQGAAFADTTTMTPTNIFQTTNDYLLDTSASIFLQGQRSNIVSEDGSHFWEVEEQRQKFLNSHGFNNNLCSFSLI* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1272 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 200 IPR011598 GO:0046983
Psa5g1272 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 217 IPR036638 GO:0046983
Psa5g1272 330 CDD bHLH_AtBPE_like 140 225 - -
Psa5g1272 330 Gene3D - 147 220 IPR036638 GO:0046983
Psa5g1272 330 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 327 IPR024097 GO:0006355
Psa5g1272 330 Pfam Helix-loop-helix DNA-binding domain 154 201 IPR011598 GO:0046983
Psa5g1272 330 MobiDBLite consensus disorder prediction 74 140 - -
Psa5g1272 330 MobiDBLite consensus disorder prediction 109 140 - -
Psa5g1272 330 SMART finulus 156 206 IPR011598 GO:0046983
Psa5g1272 330 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1272 Psa-Chr5 98286860 98289417 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1272 1 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 46.531 9.98e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa5g1272 HLH 2.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1272 - - gmx:100806696 409.838