Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1266 ATGTTGACACAATCTGATGCAAACAATGGTGGTGGATTCTCTTGTCCTAGGAAATGTGCAGAAACATTTTTTCCTCCATTAGACTATTCAGGTCAGCTTCCTTCTCAGGACATTTTTCCCATGGATGTGCATGGAGAAACATGGAGATTCAGACATGCTTATAGGGGCATGCCGAAGCGGCATCTGCTAACAACTGGGTGGAGTGATTTTGTGACCGATAAGCTACTTGTTTCGGGGGATTCACTTGTGTTTGTGAGAGATGAACACAGTGATCTTCATGTTGGAGTAAGAAGACTTACTTCCTCTTTTGGAGAGTTGAGAATAAGTGATAAGGTGATGGGAATTGGGAAAGTGAAGGCTGAAGATGTTATTGAAGCAGTAAAACTTTGTGTCAATATGAAACCGTTTGATGTCATTTACTATCCTCGGGTTAGTACTCTCGAGTTTTTTGTGAAACCCTCTTTAATTAGAAAAGAACTTCACATTAGGTGGTGTTGTGGAATGAGGTTCAAGATGGCCATTGAAACCGAAGACTCGTCAAAGACACATTGGTTAATGGGAACAATTCCTTTTGTTCAGGCTGCTGATCTAGCATGGCCTGACTCTCTTTGGAGACTTCTGCAGGTAACATGGGATGAACCTGTACTTACAAATATGAAAATGCTGAATCTGTGGCAAGTCGAAATAGTATCAAACATGCCTTCCAGAAAGAAACTGAAATTGTCTCAACATCCAACTTTCCCTATTGATGGCCAATTATCAATGCCAAGTCTTTCAAACAACAATCAACCTCCAAATGTTCCAATTTTGTATTTACTCGAAACTAGTCCTGCAGGCATGCAGGGAGCCAGACATGATCATTTTAGTCACTCCAAATCATTTCCATCTAATAATGATGCTACGACATCCAACACCGTCCCTAATAACCCGTCATTGCAAGAGGCAAACACGTGTGAGGATGTTTTATGCTCGACATCAATTTCTACACAACCATCAGAGAAACTGGATCATGCGAAGTCGAAACAGATTGTGCTGTTTGGACAAACAATACAAATTGACTCGGAAAATGAAAATGTTGAGAAGAAAATCACAAGTTCTTGTTCTGATCCTCTACAAGACCTGCCAAAACGTTCCTCTGGTGAGAGAGCTGAAGTGTAA 1158 0.4085 MLTQSDANNGGGFSCPRKCAETFFPPLDYSGQLPSQDIFPMDVHGETWRFRHAYRGMPKRHLLTTGWSDFVTDKLLVSGDSLVFVRDEHSDLHVGVRRLTSSFGELRISDKVMGIGKVKAEDVIEAVKLCVNMKPFDVIYYPRVSTLEFFVKPSLIRKELHIRWCCGMRFKMAIETEDSSKTHWLMGTIPFVQAADLAWPDSLWRLLQVTWDEPVLTNMKMLNLWQVEIVSNMPSRKKLKLSQHPTFPIDGQLSMPSLSNNNQPPNVPILYLLETSPAGMQGARHDHFSHSKSFPSNNDATTSNTVPNNPSLQEANTCEDVLCSTSISTQPSEKLDHAKSKQIVLFGQTIQIDSENENVEKKITSSCSDPLQDLPKRSSGERAEV* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1266 385 CDD B3_DNA 2 98 IPR003340 GO:0003677
Psa5g1266 385 ProSiteProfiles B3 DNA-binding domain profile. 1 100 IPR003340 GO:0003677
Psa5g1266 385 Pfam B3 DNA binding domain 2 98 IPR003340 GO:0003677
Psa5g1266 385 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 104 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa5g1266 385 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 108 361 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa5g1266 385 PANTHER AUXIN RESPONSE FACTOR 2 104 - -
Psa5g1266 385 PANTHER AUXIN RESPONSE FACTOR 108 361 - -
Psa5g1266 385 Pfam Auxin response factor 127 208 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Psa5g1266 385 SUPERFAMILY DNA-binding pseudobarrel domain 2 100 IPR015300 -
Psa5g1266 385 SMART B3_2 1 100 IPR003340 GO:0003677
Psa5g1266 385 Gene3D - 163 235 - -
Psa5g1266 385 Gene3D - 1 99 IPR015300 -
Psa5g1266 385 MobiDBLite consensus disorder prediction 354 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1266 Psa-Chr5 97859358 97860697 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1266 2 286 B3 DNA Binding Superfamily AT4G30080 48.780 4.58e-96 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Psa5g1266 B3 1.8e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1266 - - mtr:MTR_7g101280 472.241