Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1265 ATGGCAAGAACAAACGGTTGCAGTGGAACTCGTCCTTCTAATAAAAAGAAGGATAAGGAGTCAAAGAAAATGTTGATCGATGAGAATAGAGATGTGGATCCTCGGCTATGGCATGCTGTTGCTGGAAGAATGGTTCAAATTCCAGAAGTTAACTCTAACATCTTCTACTTCCCTCAAGGTCATGCCGGACATGCATATCAACCTGTCCATTTTCCTGCTACCTTCAAAATTCCATCCCAAATTCCATGTAGAGTTGCAACAATCCATTATAGGGCTGATCCTCACACATATGAAGTCTATGCAAAACTCAGGCTTGTTCCTCTCCATGTTAGGGAAGTTAGTTTTGATGATGACGTTGTTGGTGGCATCGATAACATGTCTGAAACTAAGAATAAATGTCAATCTTATACGAAAATGTTGACACGGTCAGCTTCCTACTCAGGACATTTTTCCCATGGAGAAACATGGAGATTCAGACATGCTTATAGGGGCATGCCGAAGCGGCATCTGTTAACAATTGGGTGGAGTGATTTTGTGACCGATAAGCTACTTGTTTCGGGGGATTCACTTGTGTTTGTGAGAGATGAACACAATGATCTTCATGTTGGAATAAGAAGGTCTAAAAAACGAAACGACAGTATATTTAACTTTTCATCAAAGAGGAAACCTGGACCATCCTACGGTAGACTTACTTCCTCTTTTGGAGAGTTGAGAATAAGTGATAAGGAGATGGGAATTGGGAAAGTGAAGGCTGGAGATGTTATTGAAGCAGTAAAGCTTTGTGTCAATATGAAACCGTTTGATGTGGTTTACTATCCTCGGGTTGGTACTCCCGAGTTTTTTGTGAAACCCTCTTTGATTAGAAAAGCACTTCAGGTTAGGTGGTGTTGTGGAATGAGGTTCAAGATGGCCATGGAAACCGAAGACTCGTCAAGGGTACATTGGTTTATGGGAACAATTGCTTCTGTTCAGGCTGCTGATCCAGCATGGCCTGACTCTCTTTGGAGACGTTTGCAGGTTACATGGGACCAACCTGATTTACTTACAAATACCAAGATGCTGAATCCGTGGGAAGTCGAAGTAGTATCGGACATGCCTATGTTCCCTTTTCTCCCTTTCTTGCCATCAAGTAAGAAACTGAGATGGGATCAACAACCAAGTTTCGCCATGGATGGCCAATTAGCAATGCCAACATTTCCAAACAAGGAAACTCTAAATGTTGATAGTACTGCAAGCATGCAGGGAGCCAGGCATGATGATTTTAGTTTCTCCAAATCATCCTTTCACCTTGAAAAAATTCCATTAGAACCCTTTATGTCTCATTTCCGACAATCATTTAATTACGATGCCTCAACATCCACTTCTGTCTCTAATAGCCCCACATTGCAAAAGGAGAGCAACGATGAGAATGTTTCAGGCTCGATATCAATTTCTAACAACCATCAGAGAAACTGGATCATGCGAAGCCGAAAGAGTTAG 1479 0.4178 MARTNGCSGTRPSNKKKDKESKKMLIDENRDVDPRLWHAVAGRMVQIPEVNSNIFYFPQGHAGHAYQPVHFPATFKIPSQIPCRVATIHYRADPHTYEVYAKLRLVPLHVREVSFDDDVVGGIDNMSETKNKCQSYTKMLTRSASYSGHFSHGETWRFRHAYRGMPKRHLLTIGWSDFVTDKLLVSGDSLVFVRDEHNDLHVGIRRSKKRNDSIFNFSSKRKPGPSYGRLTSSFGELRISDKEMGIGKVKAGDVIEAVKLCVNMKPFDVVYYPRVGTPEFFVKPSLIRKALQVRWCCGMRFKMAMETEDSSRVHWFMGTIASVQAADPAWPDSLWRRLQVTWDQPDLLTNTKMLNPWEVEVVSDMPMFPFLPFLPSSKKLRWDQQPSFAMDGQLAMPTFPNKETLNVDSTASMQGARHDDFSFSKSSFHLEKIPLEPFMSHFRQSFNYDASTSTSVSNSPTLQKESNDENVSGSISISNNHQRNWIMRSRKS* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1265 492 MobiDBLite consensus disorder prediction 453 477 - -
Psa5g1265 492 Gene3D - 127 207 IPR015300 -
Psa5g1265 492 ProSiteProfiles B3 DNA-binding domain profile. 152 208 IPR003340 GO:0003677
Psa5g1265 492 SMART B3_2 136 208 IPR003340 GO:0003677
Psa5g1265 492 Pfam B3 DNA binding domain 151 207 IPR003340 GO:0003677
Psa5g1265 492 Gene3D - 293 366 - -
Psa5g1265 492 MobiDBLite consensus disorder prediction 1 22 - -
Psa5g1265 492 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 26 151 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa5g1265 492 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 152 482 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa5g1265 492 PANTHER AUXIN RESPONSE FACTOR 26 151 - -
Psa5g1265 492 PANTHER AUXIN RESPONSE FACTOR 152 482 - -
Psa5g1265 492 CDD B3_DNA 152 206 IPR003340 GO:0003677
Psa5g1265 492 Pfam Auxin response factor 258 339 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Psa5g1265 492 SUPERFAMILY DNA-binding pseudobarrel domain 151 209 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1265 Psa-Chr5 97827217 97828889 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1265 30 429 B3 DNA Binding Superfamily AT4G30080 43.107 3.76e-108 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Psa5g1265 Auxin_resp 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1265 - - mtr:MTR_7g101280 508.834