Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1260 ATGAAGGAATCAACAGAATCAGACCCAATAACCATTTGCCTCAACCTCACCCATTCACTTCTCCAACAAGAAATCCCCACAGTCCATCACTTAAAAAGCAAGTGGTCAATCGCCCGAGTCAAACTCACCTCACTCCAAACTCACCTCACCGATTTCTCCACCGAGTACTCCACTTCCTCAACCTCTAACCCTCTCTCCCTCCACCTCCTCCACTCCATCTCCCAAACCCTACACGACGCCGTTTCACTCGCTCACCACTGCCAATCTACCTCCCCCGATTTACCTCTCGGAAAACTCCAAACGCAAAGCCACCTCGACTCACTCATCGCCACTCTCCACCGCCACCTCAACGACTGCGATGTCCTCTTCCGTAGCGGCCTCCTCCTCGAAACTCCCGCCTTTTCCAAACGAGAAGCCGTTCGATCTCTTTCTAGAAATCTCATCGCACGGTTGCAAATCGGGTCGCCCGATTCAAGAGCCGCCGCGATTGACTCGCTTCTTTCATTACTCCACGAAGACGATAAAAATGTCACTATAGCGGTGGCGCAGGGTGTAGTTCCGGTGCTCGTTCGTTTACTCGATTCTTCCTCTGATATGAAGGAGAAAACCGTCGCCGCAATTTCGAGAGTCTCTACAGTGGACAGTGGGAAGAATAATCTACTAGCAGAGGGATTGATGCTGTTGAATCACTTGCTTAGGGTTTTAGATTCTGGAAGTGGTTTAGCTATAGAGAAAGCTTGTATCGCGCTTCAGGCATTGAGTTTTACTAGGGATAACGCCAGAGCTATTGGATCTAGAGGTGGAATCTCGTCTCTGTTAGGGATTTGTCAAGGTGGTACACCTGGTTCACAAGCTTCTGCGGCGGCGGTTTTGAGGAATCTGGCGAAATTTAATGAAATTAGAGAGAATTTTGCGGAGGAGAATGCTATTGTTGTTTTGTTAGGGTTGGCTTCTTCTGGAACGATATTGGCTCAAGAAAATGCGATTGGTTGCGTGGCGAATTTGATTTCGGAGGATGAGGGTATGAGGGTTTTGGTTTATAAGGAAGGTGGAGTTGAGTGTTTGAAGAATTTCTGGGATTCGGCTCCAATGATTCAGAGTCTTGAAGTTGCCGTTGAAATGTTGAGGTATTTAGCTATGACGGGTCCGATTGGCGAGGTTCTTGTTGCAGAAGGGTTTATTGGGAGGGTGATGGGAGTGTTGAATTGTGAAGTTTTGACTGTGAGGATAGCAGCTGCAAAAGCTGTTTATGCTATGGGTTTGAATGGTGGAAACAAAACCAGAAAGGAAATGGGGGAATGTGGGTGTGTTCCTTTTTTGATTAAGATGTTAGATGGGAAAGGCGCGGAGGAGAAAGAATCTGCTGCAATGGCGTTGTCGGTGTTATTGCAACACCCTTTTAATAGAAGGGTTTTTCGGAAGGATGAGAGGGGAATAGTTAGTGCAGTTCATCTATTGAACCCTTCTTTGGTTAATTTAGACAAGAAATACCCTGTTTCTATTCTGGTTTCGCTCTTGCATTCTAAGACTTGTAGGAAACAAATGGTGGCTGCTGGTGCTAGTGTATATACGCAGAAGCTTGTTGAATTGGATGTTCCGGGTTCAAAGAAATTGTCGGATGGACTTGGTCGTGGTAAGATTTGGGGAGTTTTTGCAAGACCCTAA 1665 0.4655 MKESTESDPITICLNLTHSLLQQEIPTVHHLKSKWSIARVKLTSLQTHLTDFSTEYSTSSTSNPLSLHLLHSISQTLHDAVSLAHHCQSTSPDLPLGKLQTQSHLDSLIATLHRHLNDCDVLFRSGLLLETPAFSKREAVRSLSRNLIARLQIGSPDSRAAAIDSLLSLLHEDDKNVTIAVAQGVVPVLVRLLDSSSDMKEKTVAAISRVSTVDSGKNNLLAEGLMLLNHLLRVLDSGSGLAIEKACIALQALSFTRDNARAIGSRGGISSLLGICQGGTPGSQASAAAVLRNLAKFNEIRENFAEENAIVVLLGLASSGTILAQENAIGCVANLISEDEGMRVLVYKEGGVECLKNFWDSAPMIQSLEVAVEMLRYLAMTGPIGEVLVAEGFIGRVMGVLNCEVLTVRIAAAKAVYAMGLNGGNKTRKEMGECGCVPFLIKMLDGKGAEEKESAAMALSVLLQHPFNRRVFRKDERGIVSAVHLLNPSLVNLDKKYPVSILVSLLHSKTCRKQMVAAGASVYTQKLVELDVPGSKKLSDGLGRGKIWGVFARP* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1260 554 SUPERFAMILY ARM repeat 146 492 IPR016024 -
Psa5g1260 554 SMART arm_5 297 337 IPR000225 GO:0005515
Psa5g1260 554 SMART arm_5 173 212 IPR000225 GO:0005515
Psa5g1260 554 SMART arm_5 424 464 IPR000225 GO:0005515
Psa5g1260 554 SMART arm_5 256 296 IPR000225 GO:0005515
Psa5g1260 554 Gene3D - 134 229 IPR011989 -
Psa5g1260 554 Gene3D - 230 530 IPR011989 -
Psa5g1260 554 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 184 225 IPR000225 GO:0005515
Psa5g1260 554 PANTHER ARMADILLO-TYPE FOLD PROTEIN-RELATED 7 552 - -
Psa5g1260 554 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 7 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1260 Psa-Chr5 97418584 97421430 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1260 140 355 U-box Gene Family AT2G23140 28.571 1.03e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1260 - - pvu:PHAVU_009G163700g 776.933