Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1256 ATGGGTTGCGTGCTTGGGACGGCGGCCGGTGACGGAGATCAACGTCGTCGACGGAGAGAACAGCGTAAGGATTCTTCTGAAGGAAGTAATAATGTCGTTAGGGTTCGAGAGAAGCAAACGAGTCGTCATACTGGAGATTTTCCGGGGAATCTTCCGCCGCTGGAGCACCGGAAACCTATGCTTGATCCGTGTGCGGTGAATCAGCAGGGTTGGCCGTCTTGGTTGATGGCTGTTGCCGGTGAAGCAATCGGAGATTGGACTCCTCGTCGTGCAAACACGTTTGAGAAGCTTGCTAAGATTGGGCAAGGGACGTATAGTAATGTGTATAAAGCTAGAGACCTTATTACAGGGAAGATTGTGGCTTTGAAGAAAGTGAGATTTGATAATTTAGAGCCAGAGAGTGTGAAGTTTATGGCAAGAGAGATACTTGTTTTGAGGAAACTTGATCACCCTAATGTTGTAAAGCTTGAAGGATTGGTTACTTCTAGAATGTCATGCAGTCTTTATTTGGTATTTGAATATATGGAACATGATCTTGCAGGTCTTTCAGCTGGTCAAGGTGTTAAGTTCACTGAATCTCAGGTCAAATGCTTTATGAAGCAATTACTTTCTGGTCTTGAGCATTGCCACAGTCAAGGCGTGTTGCACCGTGATATCAAGGGTTCCAATCTGCTTATTGACAACGAAGGAATCCTTAAAATTGCAGATTTTGGATTGGCAACTTTCTATAATCCTAAGCAAAAGCAGTGCATGACAAGCAGAGTTGTGACACTTTGGTATCGACCCCCTGAGCTTCTTCTTGGAGCTACATTTTATGGTGTGGGTATTGACCTTTGGAGTGCTGGTTGCATTTTGGCAGAGCTGCTTGCTGGGAAGCCAATCATGCCTGGCCGAACAGAGGTTGAACAACTACACAAAATCTTTAAGTTGTGTGGCTCTCCAGCTGAGGAATATTGGAGGAAGCATAAATTGCCAAATGCTACTATCTTTAAGCCACAGCAGCCATATAAACGATGTATCTCAGAAACATTCAAGGATTTTCCTCAATCTTCGCTGCCTCTAATTGAAACTCTTCTTGCAATCGATCCTGATGGCCGTAGCACTGCATCAGCTGCTCTAAATCATGAATTTTTTACCACTGAGCCTTATGCTTGTGAACCGTCGAGTTTGCCAAAGTATCCTCCTAGCAAAGAATTGGATGTAAAAATGAGAGATGAAGAAGCTAGAAGGCAAAAAGCATTAAATGGAAAAGCTAATGCAGATGGTGGCAAAAGAGTCAGAGCACGGGAGCGTGGTCGTGCCATGCCGGCCCCAGAAGCCAATGCAGAGATCCAAACAAACTTAGATAGGTGGAGAGTTGTGACCCACGCAAATGGTAAAAGCAAGAGTGAGAAATTTCCACCTCCTCATCAAGATGGAGCTGTTGGATATCCACAAGATGCATCAAGTAAAGGACCTGTTTCATTTGGTGCCCCAGACACATCCTTTAGTTCAGGGATATTCAATATGAAATCCTCTGGATCTTCAAGAAATCATGAAGGTACAGGACTTCACAAAGGGACAAAAACTAAAAAAGAAGAGTCTCAGATGGCTTCATCATGGAAATTCATGCGTCCTTTCAAACCATCAACAATTGGACTTTCAATGGATTTATTATTTAGGAGCAAATAA 1671 0.4363 MGCVLGTAAGDGDQRRRRREQRKDSSEGSNNVVRVREKQTSRHTGDFPGNLPPLEHRKPMLDPCAVNQQGWPSWLMAVAGEAIGDWTPRRANTFEKLAKIGQGTYSNVYKARDLITGKIVALKKVRFDNLEPESVKFMAREILVLRKLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLSAGQGVKFTESQVKCFMKQLLSGLEHCHSQGVLHRDIKGSNLLIDNEGILKIADFGLATFYNPKQKQCMTSRVVTLWYRPPELLLGATFYGVGIDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPAEEYWRKHKLPNATIFKPQQPYKRCISETFKDFPQSSLPLIETLLAIDPDGRSTASAALNHEFFTTEPYACEPSSLPKYPPSKELDVKMRDEEARRQKALNGKANADGGKRVRARERGRAMPAPEANAEIQTNLDRWRVVTHANGKSKSEKFPPPHQDGAVGYPQDASSKGPVSFGAPDTSFSSGIFNMKSSGSSRNHEGTGLHKGTKTKKEESQMASSWKFMRPFKPSTIGLSMDLLFRSK* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1256 556 MobiDBLite consensus disorder prediction 505 535 - -
Psa5g1256 556 MobiDBLite consensus disorder prediction 1 52 - -
Psa5g1256 556 SUPERFAMILY Protein kinase-like (PK-like) 88 383 IPR011009 -
Psa5g1256 556 MobiDBLite consensus disorder prediction 411 445 - -
Psa5g1256 556 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524
Psa5g1256 556 SMART serkin_6 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g1256 556 Pfam Protein kinase domain 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g1256 556 ProSiteProfiles Protein kinase domain profile. 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g1256 556 Gene3D Phosphorylase Kinase; domain 1 81 176 - -
Psa5g1256 556 PANTHER CELL DIVISION PROTEIN KINASE 57 531 - -
Psa5g1256 556 MobiDBLite consensus disorder prediction 11 43 - -
Psa5g1256 556 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Psa5g1256 556 PANTHER OS01G0367700 PROTEIN 57 531 - -
Psa5g1256 556 Gene3D Transferase(Phosphotransferase) domain 1 177 418 - -
Psa5g1256 556 MobiDBLite consensus disorder prediction 422 436 - -
Psa5g1256 556 CDD STKc_CDK9_like 94 378 - -
Psa5g1256 556 MobiDBLite consensus disorder prediction 515 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1256 Psa-Chr5 96850832 96854526 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1256 86 412 Core Cell Cycle Gene Families AT5G10270 51.714 1.43e-115 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Psa5g1256 Pkinase 1.8e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1256 K08819 - gmx:100807756 998.808