Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1221 ATGGCAGAAGAAGGATCAATTGGGTATAGTTTTAGTGTTTATACAACCCATGGACTCCATTCAAAAAATCGACAGCCTAGGCCAATTCCTGTGGCGTCAGATTTCTTCAATTTTCAAGTCACGGCATACCTTCGAGATTTCTCTTCACCTCCTATGACGGTGTCAGTCATGTTTAGAACCTCTATACGTATAAATTGCAATGAATTCTTCTTGCACGATCAAAGTTTCCTTTGGTTATACTTGCAGGGATTCTCCTCCCCGTATTTCAACTCTGAAAATCTTTCCGAGATGACACTGAATCTTATACCTAAGGTCAAACGACTGTTCTTTCCCTTTGATATTCATGAACTTGCGGCACCAGTTTCCAATCATATTATCCAAGAGATTCCTTTGTTTTTGACTATTATAGTGGAAGAAAGAAGAACAGCTGAAGAGATGATGATGATAAGAGAACCTGCAGTCATCGAAGAGTCTATGCAATCTGAAAAAAGAATTCCCGCATCCAATGATGCTATTTTGTCTCTTAAAGCATACTCACTTCCTCGGAATTGCTGCATATGTATGGAGAAATTTCATGATGAATTAGAAGAAGGTGGTGATAGTGATGACGTGAGGATATCAACCATGGCATGTGGTCATATTTTTCATTATAATTGTATTGTAAAGTGGCTCCAAACAAGTCATGTATGCCCCTTGTGCCGTTATGCTATGCCCATTTGA 720 0.3903 MAEEGSIGYSFSVYTTHGLHSKNRQPRPIPVASDFFNFQVTAYLRDFSSPPMTVSVMFRTSIRINCNEFFLHDQSFLWLYLQGFSSPYFNSENLSEMTLNLIPKVKRLFFPFDIHELAAPVSNHIIQEIPLFLTIIVEERRTAEEMMMIREPAVIEESMQSEKRIPASNDAILSLKAYSLPRNCCICMEKFHDELEEGGDSDDVRISTMACGHIFHYNCIVKWLQTSHVCPLCRYAMPI* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1221 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 137 238 - -
Psa5g1221 239 SUPERFAMILY RING/U-box 183 237 - -
Psa5g1221 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 238 IPR013083 -
Psa5g1221 239 ProSiteProfiles Zinc finger RING-type profile. 184 234 IPR001841 -
Psa5g1221 239 SMART ring_2 184 233 IPR001841 -
Psa5g1221 239 Pfam RING-H2 zinc finger domain 183 234 IPR024766 GO:0008270
Psa5g1221 239 PANTHER F6A14.12 PROTEIN-RELATED 137 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1221 Psa-Chr5 95007428 95008338 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1221 153 238 C3H Transcription Factor Family AT1G18760 33.696 8.42e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1221 - - aprc:113859940 126.331