Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1219 ATGGAGTGGAATTTGAAAGCTTCTTCTTGGGATTTGAGTGGTATAGAAGAGGCAACAACATTACCTAACATAGAAACAATGGAAGAATCAAATAGATTTGGAGGTTATAAAACCGAAGGGGAGTTTTCTGTTGACTTGAAGCTTGGTCAGGTTGGGAATTCTGCTACTGAATCATCATCATCACCACTTCCTTTGTCCAAAGATGTTTCTGCTTCTGTTTCCAAAATTGCGTCGCCTTCTTCGTCTTCGGGATCTTTTAAGAGAGCTCGAGCGGTTAATAACACTACATTGACAGTTTCGTGTGTTGTGGATGGGTGCAATTCTGATCTTAGTAATTGTAGAGATTATCATAGGCGGCATAAGGTTTGTGAACTTCATTCCAAGACTCCTGAGGTTTCAATTGGTGGACTCAAACAAAGATTCTGCCAACAGTGTAGCAGGTTCCATTCGCTCGATCAATTTGATGAAAGAAAAAGAAGTTGCAGGAAGCGTTTAGACGGACACAACCGAAGGAGAAGAAAACCTCAGCCTGAACCTATCACGCGACCTGCTGGCAGTTTTTTGTCCAATTACCAAGGCACACAGTTGCTACCCTTTTCGAGTTCTACTGCCATGGTGAATTCGGCTTGGAGTAACGGACTCATTTCTTCCGGTGAAAGTGGCATGCTTCACATCCACAATCAACACCAACAAGTTCCGGTAATTGACAAACAAGATCTTTTTCTCGGCTCTACTGCAACAAGTTATGGAGAAGGGAAGCAACTTCAATTCTTACACACTGACAACAACATTCCCTCGCTTCATAACCAGAACACACCTCTTCTAAGGACAAGTAACAAAATGTTCTGTGATAGCTTAACGAATTCTTCAGTAAACGAATCTCCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACACACACACCCGAGAATGGTTTGAACCAAATGGTGCAGCAGCAGCAACAGCAGCCGCCTCATTCTATGTCCCTTATGCAGCCCTTAGGACTGAGTCTGCATGGTAATAACAACAGCTTTGAATCTATGGATAGAGTTTTGGTCCCTAATGGGAGTGAGAGTGATCATTGTTCATCATTGTATAACATTGCTTCGGATGGTTCTCAAGGCAATGAAGCACCACAACTCTTCCCCTATCAATGGGAATAG 1164 0.4287 MEWNLKASSWDLSGIEEATTLPNIETMEESNRFGGYKTEGEFSVDLKLGQVGNSATESSSSPLPLSKDVSASVSKIASPSSSSGSFKRARAVNNTTLTVSCVVDGCNSDLSNCRDYHRRHKVCELHSKTPEVSIGGLKQRFCQQCSRFHSLDQFDERKRSCRKRLDGHNRRRRKPQPEPITRPAGSFLSNYQGTQLLPFSSSTAMVNSAWSNGLISSGESGMLHIHNQHQQVPVIDKQDLFLGSTATSYGEGKQLQFLHTDNNIPSLHNQNTPLLRTSNKMFCDSLTNSSVNESPCALSLLSSSQTHTPENGLNQMVQQQQQQPPHSMSLMQPLGLSLHGNNNSFESMDRVLVPNGSESDHCSSLYNIASDGSQGNEAPQLFPYQWE* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1219 387 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 17 387 - -
Psa5g1219 387 SUPERFAMILY SBT domain 99 180 IPR036893 GO:0003677|GO:0005634
Psa5g1219 387 Gene3D - 92 162 IPR036893 GO:0003677|GO:0005634
Psa5g1219 387 ProSiteProfiles Zinc finger SBP-type profile. 98 175 IPR004333 GO:0003677
Psa5g1219 387 Pfam SBP domain 101 174 IPR004333 GO:0003677
Psa5g1219 387 MobiDBLite consensus disorder prediction 162 187 - -
Psa5g1219 387 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 387 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1219 Psa-Chr5 94994980 94997052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1219 1 387 SBP-box Gene Family AT5G50670 39.901 3.77e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Psa5g1219 SBP 6.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1219 - - gmx:100787407 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g0833 7 60542282 60545484 Psa5g1219 5 94994980 94997052 PCT