Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1210 ATGGAGAACAACAACAACAACCACAACGAACACCAACAAACCCAATATCCAACACCGCAACCCACGGCGGGCACTCCCCCGCCATTCCAACACCTCTTACAGCAACAACAACAACAGCTCCAAATGTTCTGGTCCTACCAAAGACAAGAAATCGAACATGTCAACGACTTCAAAAACCACCAACTTCCATTAGCACGCATTAAGAAAATCATGAAAGCCGACGAAGACGTTCGCATGATCTCCGCTGAAGCACCTATCCTTTTCGCTAAAGCTTGCGAGCTTTTCATTCTCGAACTCACCATTCGTTCTTGGCTTCATGCTGAAGAGAATAAACGACGAACCCTGCAGAAAAACGACATCGCTGCTGCTATTACGCGAACTGATATTTTTGATTTTTTGGTTGATATTGTTCCGAGAGATGAGATTAAAGATGAAGCTACCATTGTTGGCGCTACTGCTAGTGGTGTTCCTTATTATTATCCTCCTATGGGGCAACCTGCGGGGATGATGATTGGTCGTCCGGCGGTTGATCCGGCTACTGGTGTTTATGTTCAGCCTCCTTCTCAGGCTTGGCAGTCCGTTTGGCAGACTGGTGCTGATGATGGCTCTTATGCTGCTGCGGCCGGTGGTGGTACTAGTGGTCACCACAATGTCGATGGCTAG 663 0.4781 MENNNNNHNEHQQTQYPTPQPTAGTPPPFQHLLQQQQQQLQMFWSYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEATIVGATASGVPYYYPPMGQPAGMMIGRPAVDPATGVYVQPPSQAWQSVWQTGADDGSYAAAAGGGTSGHHNVDG* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1210 220 MobiDBLite consensus disorder prediction 1 24 - -
Psa5g1210 220 Pfam Core histone H2A/H2B/H3/H4 4 124 IPR007125 GO:0003677
Psa5g1210 220 MobiDBLite consensus disorder prediction 1 19 - -
Psa5g1210 220 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 1 220 - -
Psa5g1210 220 Gene3D Histone, subunit A 28 139 IPR009072 GO:0046982
Psa5g1210 220 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 220 - -
Psa5g1210 220 SUPERFAMILY Histone-fold 7 133 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1210 Psa-Chr5 94580848 94583982 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1210 23 220 CCAAT-HAP5 Transcription Factor Family AT3G48590 80.676 9.78e-105 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Psa5g1210 Histone 4.5e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1210 - - gmx:100818447 337.035