Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1195 ATGGAGGCTCAAGCTCACAATCAGAGAGATCGCAGAATAGATGGTCTTGGAGATCTTCGAGTTCTTCCCGACGAAATCCTCTGCTCCATTTTGGAACGGCTCACTCCTCGAGATGCTGCTCGCGTCGCTTGCGTTAGCAGTGTGATGTATATACTGTCCAATGAAGAACCACTGTGGATGAGTCTATGCCTAAATGGAGCATCTGGTTTTCTTGAATACAAAGGCTCTTGGAAGAAAACTGCCCTGCATAATGAGAATCTGCCAGACAAGTACAAAGAGGGCCACGGGCAGCCTTTACATTTTGATGGATTCAACTCTTTATTTCTGTATCGGAGATTATACCGGTGTCGCACCACATTGGATACATTTTATACAGAAGGTGGAAATGTGGAAAGAATAAAAGACATCTCATTGAAAGACTTTTATAACGAGTATGACGTGAAGAAACCGGTCATGCTTAAGGGACTGGCGGATACATGGCCTGCCAGGCATAAATGGACAACTGATCAGCTGTTACTAAACTATGGAGACGTGGCGTTTAAAATTTCTCAAAGGAGTTCCAAAAAGATCTCCATGAAGTTCAAGGATTATGTCGCGTACATGAAAGATCAACATGATGAAGATCCATTGTATGTTTTTGACGAAAAGTTTGGTGAACATGCACCTAGCTTATTGAAGGATTACTGCGTGCCTCATCTTTTTCAAGAAGACTTCTTTGATATCTTAGATATAGACAAACGACCATCCTATAGGTGGCTCATAATTGGACCGCAGAGATCTGGTGCATCTTGGCATGTTGATCCAGCTCTTACAAGTGCATGGAACACTCTTCTTTCGGGCCGTAAAAGGTGGGCACTATATCCTCCCGGAAAAGTGCCTTTAGGTGTTACAGTTCATGTTAATGAAGAAGATGGTGATGTCAGTATTGAGACTCCATCATCACTGCAGTGGTGGCTAGATTTTTATCCTCTTCTTGCTGACGAAGACAAGCCAATTGAATGTACACAACTACCTGGAGAGACAATTTATGTTCCCAGTGGATGGTGGCACTGTATTTTAAATTTGGAAACAACTATTGCAGTCACGCAAAATTTTGTGAATTCTAATAACTTTGAATTTGTGTGTTTGGATATGGCACCTGGTTATCGTCATAAAGGAGTTTGTCGTGTAGGTTTGCTTGCTCTTGAAGATGATGTTGATGAAAATGGCATACAGGACATGTCATGTAATGAAGAAAACTTAAGTTATTCTGATTTGTCAAGGAAAGAGAAAAGACCCAAAACTCTGAAAGATGTTGACGATCTAGGTTTTGAAAGTGAATTAAGTTGTGTATCTAGAAGCTATCACTTATGGAAAGGAGGATTTTCTTATGATATTAATTTCTTATCCATGTTTTTGGATAAGGATAGAGACCACTATAGTTCTGAGTGGAGCTCGGGCAATTCCATTGGTCAACGAGAACTAAGAGAATGGTTATCCAAGCTTTGGATTCAAAAACCAGAAATGAGAGATCTAATATGGAAGGGAGCTTGTATTGCGCTAAATGCAGACAAGTGGTTAGAGTGTCTGTCTAAAATTTGTGCCTTCAACAATTTGCCTCCTCCCACCGATGATGAAAGGCTTCCTGTTGGTACGGGTAGCAATCCTGTTTATCTAGTGGGGAACTATGTTGTTAAGATTTTTGTCGAAGGAGGACTGGAAGCTTGCCTTTATTGTTTAGGCACAGAGCTAGAATTTAATAATCTGCTGCTTGAAGCCAACTCCTCTATCAGGAAACATATTCCTAGTGTTATAGCCAGTGGGGTTGTTTATCTTGAAGACGGGTCCTATACAAATTTAAGTTGGGATGGAAAAGGAGTTCCCAGTGTCATTTCGAAGACCAATATTATCACAGAGAAATGCAATGTTGATGGTTTCCCATTTGGGGTTTGGGGCAAGAAACTGTTAGAGTATAGGAATGCTGGTATTCCGGTGGACGGATCAATTAGTTTAGCCTGTAACTCAAGCATATGGCCATATGTGATAACTACGCGATGTGAAGGGAATATGTTTGCAGACTTAAGAGACAGCTTATCGTGGGAAGATACAACAAACTTGGCCTCCTTCTTGGGGGAGCAACTGCGCCACATTCATCTTTTGCCACATCCACCTTTAAATAGTTCATTTATATCTGATATTGAACATGAAATAAGCTGGTCTGAGGAAAATGGTTGTATTTCAAATGTTAATTGTAAATCAAACAGTGCTGCAGAATGGGGAATCTTCACCAGAATATTAATAAAGAAGAGGAAGGACGTCTCAAGTCGTTTGACCAAGTGGGGAGATCCAATTCCTAGCAAACTGATTGAGAAAATTGAGGAATATATCCCATCTGATTTATCTAAGCTGCTAAATATAAATGAGAATTTCTCAAGTGGTGCTTATAAACCTTGCTCCTGGATACACACTGACATTATGGATGATAATATTTACATGGAACCGTCATTGGTTTGTTCTACCTCCAGTAGGAATACAGAAGATGCTGCCCAGGTGGACAATGGTTTATTGAGTGACCATGATGGAGTGAAATCCTGGTGTCCCAGTTACATCCTTGATTTCAGTGATCTTTCTATAGGAGATCCTATTTTTGACTTGATACCAATTTATTTAGATGTGTTTAGAGGCGATTCGAATCTCCTTAAGAAATTTTTAGAAAGTTACAAACTTCCTTTCCCGTGCAACATATCGAAGTGCGAGTTGACAGAGGGTGGTCAAAATTTTGGTCGACTTTCATATGCTGCTATGTGTTATTGTATTTTGCATGATGATAATGTCTTGGGAGCTATTTTTAGCATATGGGAAGAACTAAGATCATCAGAGTCATGGGAAGAAGTTGAGATGACGGTATGGGGAGAGTTGAACAATTACAAAGGCTTTCTTTGA 2922 0.4014 MEAQAHNQRDRRIDGLGDLRVLPDEILCSILERLTPRDAARVACVSSVMYILSNEEPLWMSLCLNGASGFLEYKGSWKKTALHNENLPDKYKEGHGQPLHFDGFNSLFLYRRLYRCRTTLDTFYTEGGNVERIKDISLKDFYNEYDVKKPVMLKGLADTWPARHKWTTDQLLLNYGDVAFKISQRSSKKISMKFKDYVAYMKDQHDEDPLYVFDEKFGEHAPSLLKDYCVPHLFQEDFFDILDIDKRPSYRWLIIGPQRSGASWHVDPALTSAWNTLLSGRKRWALYPPGKVPLGVTVHVNEEDGDVSIETPSSLQWWLDFYPLLADEDKPIECTQLPGETIYVPSGWWHCILNLETTIAVTQNFVNSNNFEFVCLDMAPGYRHKGVCRVGLLALEDDVDENGIQDMSCNEENLSYSDLSRKEKRPKTLKDVDDLGFESELSCVSRSYHLWKGGFSYDINFLSMFLDKDRDHYSSEWSSGNSIGQRELREWLSKLWIQKPEMRDLIWKGACIALNADKWLECLSKICAFNNLPPPTDDERLPVGTGSNPVYLVGNYVVKIFVEGGLEACLYCLGTELEFNNLLLEANSSIRKHIPSVIASGVVYLEDGSYTNLSWDGKGVPSVISKTNIITEKCNVDGFPFGVWGKKLLEYRNAGIPVDGSISLACNSSIWPYVITTRCEGNMFADLRDSLSWEDTTNLASFLGEQLRHIHLLPHPPLNSSFISDIEHEISWSEENGCISNVNCKSNSAAEWGIFTRILIKKRKDVSSRLTKWGDPIPSKLIEKIEEYIPSDLSKLLNINENFSSGAYKPCSWIHTDIMDDNIYMEPSLVCSTSSRNTEDAAQVDNGLLSDHDGVKSWCPSYILDFSDLSIGDPIFDLIPIYLDVFRGDSNLLKKFLESYKLPFPCNISKCELTEGGQNFGRLSYAAMCYCILHDDNVLGAIFSIWEELRSSESWEEVEMTVWGELNNYKGFL* 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1195 973 PANTHER JMJC DOMAIN-CONTAINING PROTEIN 8 6 906 - -
Psa5g1195 973 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 6 906 - -
Psa5g1195 973 ProSiteProfiles JmjC domain profile. 219 382 IPR003347 -
Psa5g1195 973 SUPERFAMILY Clavaminate synthase-like 116 374 - -
Psa5g1195 973 Pfam F-box-like 21 64 IPR001810 GO:0005515
Psa5g1195 973 ProSiteProfiles F-box domain profile. 16 62 IPR001810 GO:0005515
Psa5g1195 973 SMART cupin_9 214 377 IPR003347 -
Psa5g1195 973 Gene3D Cupin 114 367 - -
Psa5g1195 973 SUPERFAMILY F-box domain 8 67 IPR036047 GO:0005515
Psa5g1195 973 Gene3D - 9 93 - -
Psa5g1195 973 Pfam Phosphotransferase enzyme family 652 900 IPR002575 -
Psa5g1195 973 SMART fbox_2 22 62 IPR001810 GO:0005515
Psa5g1195 973 Pfam Cupin-like domain 148 369 IPR041667 -
Psa5g1195 973 SUPERFAMILY Protein kinase-like (PK-like) 671 903 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1195 Psa-Chr5 93691792 93701603 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1195 8 969 Glycosyltransferase AT1G78280 60.865 0.0 1190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Psa5g1195 APH 3e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1195 - - mtr:MTR_3g099370 1770.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1195 5 93691792 93701603 Psa5g1195 5 93691792 93701603 ECH