Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1177 ATGGCGCTTCTACGTATTCCCTCTCCTCAATTATCCACAAAACACCACAATGGAGTAATAATAACCTCTTTCTCCTCCTTAGACTTTAACAAGAACAAAACCTATTCCATCAACCCCAAATCCAATTCACTGTTTTCTTCAATTCACTCTCTACGTCTATCTATTACTCATACACAAACCTTAATTAGAACCAAACAACAAGCCAATTTTACTCTCAGATTTGCGTCTACTTCCGAAGAACAACAAACTCAAGTAACCGAGGAAAACACTGAAGAATTGTCTAGTACTAGGTTGCTTGCTGAGAATGTTCCATGGACAAGTACTGCCGAAGATATTCGTTCTTTATTTGAAAAACATGGAAAAGTCATTGATGTTGAGCTTTCTATGTATAATAAGAACAGAAACAGAGGTTTAGCGTTTGTGGAAATGAGTTCTCCAGAAGAGGCTCTTGCAGTTTTCAATACTCTTCAATCATATGAGTTTGAAGGCCGCGTAATAACTCTCAAATATGCTCGGCCTAGAAAGGAGAAAACACCGCCGCCAGTGGAAAAAAAGCCAATAACATTTAACTTGTTTGTCGCAAACTTGTCCTATGCAACGACGTCTAAAGATCTCGGAGTGTTTTTTGACTCGGGGGCCAGGGGAGTTATTTCTGCAGATGTTATATACAACGAGAATCCCAGAAGACCATCTGGTTATGGATTTGTGTCCTTCAAGTCCAAGAAAGAAGCGGATGATGCTCTTTCCGCGTTTCAAGGAAAGAATTTGAAGGGAAGACCGATCAGAGTTGCACCTAGTAAGCGATTTGTTCAACTGGCAGAGGAGGGTGCAGGGTCCGAAGATAAATCTTCTGAGTCGAGCGCGAACGAGGCAGTAACGGAGAAAGCTGATTGA 894 0.4116 MALLRIPSPQLSTKHHNGVIITSFSSLDFNKNKTYSINPKSNSLFSSIHSLRLSITHTQTLIRTKQQANFTLRFASTSEEQQTQVTEENTEELSSTRLLAENVPWTSTAEDIRSLFEKHGKVIDVELSMYNKNRNRGLAFVEMSSPEEALAVFNTLQSYEFEGRVITLKYARPRKEKTPPPVEKKPITFNLFVANLSYATTSKDLGVFFDSGARGVISADVIYNENPRRPSGYGFVSFKSKKEADDALSAFQGKNLKGRPIRVAPSKRFVQLAEEGAGSEDKSSESSANEAVTEKAD* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1177 297 Gene3D - 179 293 IPR012677 -
Psa5g1177 297 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 31 294 - -
Psa5g1177 297 SMART rrm1_1 190 264 IPR000504 GO:0003723
Psa5g1177 297 SMART rrm1_1 97 169 IPR000504 GO:0003723
Psa5g1177 297 Gene3D - 55 178 IPR012677 -
Psa5g1177 297 PANTHER OS08G0483200 PROTEIN 31 294 - -
Psa5g1177 297 SUPERFAMILY RNA-binding domain, RBD 95 263 IPR035979 GO:0003676
Psa5g1177 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 268 IPR000504 GO:0003723
Psa5g1177 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 173 IPR000504 GO:0003723
Psa5g1177 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 262 IPR000504 GO:0003723
Psa5g1177 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 166 IPR000504 GO:0003723
Psa5g1177 297 MobiDBLite consensus disorder prediction 273 297 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1177 96 288 Eukaryotic Initiation Factors Gene Family AT2G36660 26.442 3.06e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1177 - - gmx:100790439 291.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1177 5 92124694 92126421 Psa5g1177 5 92124694 92126421 ECH