Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1172 ATGGCACTTGAAACCGTTGTTTTTCCTCAAGATCCATTCAATTATACTTATAAGGATAATTACTTCAACTTATTAAGTAATGACTATGGTAATACTAGTACTTTACAAGCTGAAGAACAAGAGAATGTTCTCCTAGGAATCATCAACAACAACAACAACATAGTAGAGCAACAAAATCTCCATGCAAATTGGGATTCTTGTTCGGTTAAAGATCAATGGGAGTATTCACACTCTTCTTCTCCTGAAATCTGCACCGTTGATCAAACTATCAAAGCTCCTCCTTCTACAACAGTGGAAGCAGCTACAGAAACTCCCACGTGTCGGAGAAAACGACGTCGTATCAAAAGTGCGAAGAACAAAGAGGAAATTGAAAACCAAAGGATGACTCATATCACAGTTGAAAGAAATCGTAGAAAACAAATGAATGAGTACTTGAACGTGCTTCGATCTTTGATGCCTTCTTCTTATGTTCAAAGGGGCGACCAAGCTTCAATTATTGGGGGAGCAATAAACTTCGTAAAAGAGTTAGAACAACTTTTACAGTCGATGGGGGGCCAGAAGAAAACAAAGGAAAACATATCCTTAAATGGACCACCTTTTTCTGAGTTTTTCACTTTTCCTCAGTACACAACTCACAACAACAATAACAACAACGTTACTATGGAACAAAAACAATGTGCTGTAGCAGACATTGAAGTCACCATGGTAGATTCTCATGCCAACATCAAAATACTTTCTAAGAAACAATCCGGACATCTCATGAAAATTGTTCTTGCCTTACAAAATCTTAGACTCACCATTCTTCATCTTAATGTCACAACTATTGATCAAATGGTTCTTTACTCAGTCAGTGTCAAGGTAGAGGAGGGGAGTCAGCTGAATAGTGTGGATGAAATTGCGGCTGCTGTGAATCAACTATTAAGGACAGTTCAACAAGAATTGGCTTATCAATCAACTTGA 960 0.3781 MALETVVFPQDPFNYTYKDNYFNLLSNDYGNTSTLQAEEQENVLLGIINNNNNIVEQQNLHANWDSCSVKDQWEYSHSSSPEICTVDQTIKAPPSTTVEAATETPTCRRKRRRIKSAKNKEEIENQRMTHITVERNRRKQMNEYLNVLRSLMPSSYVQRGDQASIIGGAINFVKELEQLLQSMGGQKKTKENISLNGPPFSEFFTFPQYTTHNNNNNNVTMEQKQCAVADIEVTMVDSHANIKILSKKQSGHLMKIVLALQNLRLTILHLNVTTIDQMVLYSVSVKVEEGSQLNSVDEIAAAVNQLLRTVQQELAYQST* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1172 319 Gene3D - 115 192 IPR036638 GO:0046983
Psa5g1172 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 176 IPR011598 GO:0046983
Psa5g1172 319 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 314 - -
Psa5g1172 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 125 188 IPR036638 GO:0046983
Psa5g1172 319 Pfam Helix-loop-helix DNA-binding domain 126 177 IPR011598 GO:0046983
Psa5g1172 319 SMART finulus 131 182 IPR011598 GO:0046983
Psa5g1172 319 PANTHER MAX DIMERIZATION, MAD 1 314 - -
Psa5g1172 319 CDD bHLH_AtFAMA_like 128 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1172 Psa-Chr5 91432905 91434770 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1172 1 287 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.134 2.20e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa5g1172 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1172 - - gmx:100805420 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1172 5 91432905 91434770 Psa5g1172 5 91432905 91434770 ECH
Psa2g1606 2 126420933 126422824 Psa5g1172 5 91432905 91434770 PCT