Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1171 ATGAGGAAGAAAAGGAAAGGAAGTGAGACTGATGCATCTAGGAATCTGGGTGATGTTATTTTGCCTTTGGATCGTGGTTCTGGCTCTGTTGAGTCTTCGAATTTGAAGTCTCATTACTCGCTGGAAGATTGTTGTAGGTTGAAGAAAAGGTGCAAAGAAGATGCGGGTACCGAGCCTGCTGGCTCTTTTAAGAGTAGGCTTGCTGGCATTGCTACTGCGCCGCCGTTCGGGACGTCGTCTTTGCTTACCCCGAGTAGAGGTTTAAAGAGGAAGATAGGTTGCATTGATGTTGCTACTCAGATGGGAAGGAAGAAGAAGATTGAGGATGATTATGTTTACGGTGAATCAATCGGGCAAGGTAAATTTGGATCTGTTTATCTGTGTTGGTCTAGGGCTAGTGGAGCGGAATATGCATGTAAGACTTTGAGGAAGGGAGAAGAGACTGTTCATCGTGAGGTTGAGATAATGCAACACTTGTCTGGACATTCTGGGGTTGTGACGCTGCTAGCAGTTTACGAAGAAGAAGAATCCTTTCATCTTGTGATGGAATTGTGCTCTGGGGGACGACTGATTGATCAAATGGTTAAGGATGGACCTTATTCAGAACAGCGGGCTGCTAACATACTCAAGGAAGTGATGTTAGTCATCAAGTATTGTCATGACATGGGAGTTGTGCACAGAGATATCAAACCTGAAAATATTCTGCTCACCAAATCAGGAAAGTTAAAGCTTGCGGATTTTGGACTCGCCATGAGAATTTCGGAAGGTCAAAACTTGACTGGATTGGCTGGAAGCCCTGCATATGTTGCCCCCGAAGTATTGTCGGGCAAATACTCTGAGAAGGTTGATATATGGAGTGCTGGAGTGCTCCTGCATGCTCTGTTGATTGGCTGCCTTCCATTTCAGGGAGATTCATTGGAAGCTGTTTTTGAGGCTATTAAGACTGTCAAATTAGATTTCCAAGCAGGGATGTGGGAATCAATATCTAAACCTGCACGAGATCTTATTGGGAGAATGCTGTCAAGGGATACCTCAACCAGGATATCAGCTGATGAAGTACTTAGGCATCCATGGATTTTGTTCTACACTGCCCAATCCTTGACGATGCTGCCCATCAAAGCAAAATTGAAGAATCAAACTGGTGGTGCTTGCAGACGGCTTATCGCGGCACCAGAACCTAGGTTAGGAGGAAACTTGATAGATAATGGCTCACTTAGTGAGCTTTTAACCTCTGAAAGTTGCAATTCAGATGATCAGGATGAATGTGCGTTGATTGATGCACTTGCCACTGCAATTTCCCATGTGAGGATATCTGAACCAAAGAGGAGCAGGTTGTGTAGTCCCACCGGCCCCATAGTTCAGCAAGGTTCATCTAACATGAAGGCTAACAACCTTTGTAAAGCATTTTGA 1410 0.4468 MRKKRKGSETDASRNLGDVILPLDRGSGSVESSNLKSHYSLEDCCRLKKRCKEDAGTEPAGSFKSRLAGIATAPPFGTSSLLTPSRGLKRKIGCIDVATQMGRKKKIEDDYVYGESIGQGKFGSVYLCWSRASGAEYACKTLRKGEETVHREVEIMQHLSGHSGVVTLLAVYEEEESFHLVMELCSGGRLIDQMVKDGPYSEQRAANILKEVMLVIKYCHDMGVVHRDIKPENILLTKSGKLKLADFGLAMRISEGQNLTGLAGSPAYVAPEVLSGKYSEKVDIWSAGVLLHALLIGCLPFQGDSLEAVFEAIKTVKLDFQAGMWESISKPARDLIGRMLSRDTSTRISADEVLRHPWILFYTAQSLTMLPIKAKLKNQTGGACRRLIAAPEPRLGGNLIDNGSLSELLTSESCNSDDQDECALIDALATAISHVRISEPKRSRLCSPTGPIVQQGSSNMKANNLCKAF* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1171 469 PANTHER SERINE/THREONINE-PROTEIN KINASE PEPKR2 28 461 - -
Psa5g1171 469 Gene3D Transferase(Phosphotransferase) domain 1 102 386 - -
Psa5g1171 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Psa5g1171 469 ProSitePatterns Protein kinases ATP-binding region signature. 117 140 IPR017441 GO:0005524
Psa5g1171 469 PANTHER SERINE/THREONINE-PROTEIN KINASE 28 461 - -
Psa5g1171 469 ProSiteProfiles Protein kinase domain profile. 111 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g1171 469 SMART serkin_6 111 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g1171 469 CDD STKc_CAMK 110 358 - -
Psa5g1171 469 Pfam Protein kinase domain 111 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g1171 469 SUPERFAMILY Protein kinase-like (PK-like) 102 370 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1171 Psa-Chr5 91252336 91258632 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1171 103 359 EF-hand Containing Proteins AT4G35310 44.944 1.40e-78 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Psa5g1171 Pkinase 6.5e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1171 - - mtr:MTR_3g099767 820.461