Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1140 ATGTCTCAACAGCAACAACAACACCGCGTAGATCCAAAAATCTGGAAGGCATGCGCCGGAGATTCCTTCACCGTTCCGAAACTTCATTCCAAAGTATACTATTTCCCTCAAGGTCATTTACAACATGTCTGCCCCAACACTCCTAACACTCAAACACTCGATGGTTGCAATCCGATGATTCTCTGCACAGTTTCTGCCGTCGATCTACTTGCAGATCCTGAAACTCATCAAGTTTTTGCAAAATTACTTCTCACTCCCGTAATTGACAGAAGCGTTGTTCCTGTTGGTGCTAGCAACGAAGAGGATGGTGATCAGATTGTTTCCTATGCTAAGACTCTAACCAAATCTGATGTTAAAAGCAGAGGTGTACTCTACCTACCTGTGGCCTGCGCCGACTCGATCTTCCCAGAGCTCCCGCCGCTTGACTCTAGAAACCAATCGCCGTCTCAAGATCTCTTCCTCACCGACGTTGGTGGTGTAGTCTGGAAATTTCGCCACGTCTTCCGTGGGTCTACCTTTCGACACCTGTTCACTACTGGCTGGAGTGGATTTGTTGGTGAGAAGAAACTCGTGGACGGCGATAATGTTGTTTTCGTTATAAACTCCACTGGACGTATCTCTATTGGAATTCGCAGGAAAACGAAGCCGGCTTCCGCTGCCAAAATGATGGAAAAGGAAGTTAACACGGCAGTAGAATTGGCAAAGAAGAACGCAGCGTTTGAGGTTATGTACTATCCGACGGTTGGTGAATTTGATTTTGTGGTGGGAGCTAAGACTGTGGAGGATGCAATGATGTTTAATTGGAGTTGTGGGATGAGAGTTACACACACGGAGAAGAATGACGATACTCCAAAGGGATGTTCTATTTTTCATGGGACAATAAATAATCTCTCCCCTCCTTCAACTCGTCCATGGCGCATGCTTCAGATTGAATGGGATGAACCTCAAGTCCCTGAAAAACTAAAGCAATTAAGTCCTTGGCAGGTTGAACTTAGTGATTCTAAGACACCTGTATCAGATATGCAGTTCCCTCCAACAAAAAAGTTGAGAGGTGCTCAAGGTTATGTCTTATCAAGTGGGCAAAACATTAGCAATCCCCACACCTATATCTCTAGTATTTTGAACTCCTTTAAAACAAAGAATGCTAAGAATGCTGATATCGACAATTCCAACACCAAGAATATTAATTCTGGTTCAATAATGTTATTTGGTCAGAGGATACAACCTATTGAAAGTGAGTTGTATAATTCTGATATCAAAGAAGACGACAGTTGTAAGTGGAACAATGAAGTTGAAGAGAAAACTTGTACAAAAGTAGTTCAATATGCTTTTACAAAATAA 1341 0.4273 MSQQQQQHRVDPKIWKACAGDSFTVPKLHSKVYYFPQGHLQHVCPNTPNTQTLDGCNPMILCTVSAVDLLADPETHQVFAKLLLTPVIDRSVVPVGASNEEDGDQIVSYAKTLTKSDVKSRGVLYLPVACADSIFPELPPLDSRNQSPSQDLFLTDVGGVVWKFRHVFRGSTFRHLFTTGWSGFVGEKKLVDGDNVVFVINSTGRISIGIRRKTKPASAAKMMEKEVNTAVELAKKNAAFEVMYYPTVGEFDFVVGAKTVEDAMMFNWSCGMRVTHTEKNDDTPKGCSIFHGTINNLSPPSTRPWRMLQIEWDEPQVPEKLKQLSPWQVELSDSKTPVSDMQFPPTKKLRGAQGYVLSSGQNISNPHTYISSILNSFKTKNAKNADIDNSNTKNINSGSIMLFGQRIQPIESELYNSDIKEDDSCKWNNEVEEKTCTKVVQYAFTK* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1140 446 Gene3D - 106 214 IPR015300 -
Psa5g1140 446 PANTHER AUXIN RESPONSE FACTOR 6 218 - -
Psa5g1140 446 PANTHER AUXIN RESPONSE FACTOR 222 354 - -
Psa5g1140 446 Pfam Auxin response factor 230 308 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Psa5g1140 446 CDD B3_DNA 108 212 IPR003340 GO:0003677
Psa5g1140 446 Pfam B3 DNA binding domain 110 213 IPR003340 GO:0003677
Psa5g1140 446 ProSiteProfiles B3 DNA-binding domain profile. 109 214 IPR003340 GO:0003677
Psa5g1140 446 SUPERFAMILY DNA-binding pseudobarrel domain 104 215 IPR015300 -
Psa5g1140 446 SMART B3_2 109 214 IPR003340 GO:0003677
Psa5g1140 446 Gene3D - 267 337 - -
Psa5g1140 446 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 218 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa5g1140 446 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 222 354 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1140 Psa-Chr5 89085373 89086941 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1140 8 372 B3 DNA Binding Superfamily AT1G77850 35.971 4.37e-82 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Psa5g1140 B3 1.2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1140 - - mtr:MTR_5g040880 353.984