Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1129 ATGTTAATACAAAGTTCTCTTAGTTCAGTTGAAGCTGGTCTATGTAATGAATATAATGATGGGGAAAATTTTCAATGTGACGGGATACCTGGTGGTGAAACATGGCAGGTTTGTCTGAAATGCAACAAGTACTCTATTGACTGGAGTAAAAAAGCTAATCCAATGGAAGAGGATAGAAGGAATGCTGATGATCCTTACAACTCAAACTGTGTAAGAAGCTCTGGTCAACCATCAACTGCAAGTATAATGACTGAAAAGACTGCACCAAATATTGTATACAGGAGAAAAAAGCTACGCAAGGGATCAACTGCCCCTCTTTTCAAGCTTGGGCCAACTGATGTGACAATTGCCAATATCCCTTCAGTCATAAGTTCCTCTTTGCATTTATCATCAGGCGAGGATCAAACAACTGATTTTGTAGTTAGGCATCAAATTGAATTGGTCAAAGAACCTACTCTGCCTTCTGTCTTACTTGCAGAAGCAGCCAAAGATATCACACAGAAAAAATTAGGTATTGGCAGTGTAAATGATAGTTGTTCCTCTTCAAAGTCAAATATGGCACTTGTGTCAGGTTCCTTAGATACTGAGATGGATAACTCTGGCGAATGCTCTTCCTCCGGTGTAATAGGAATGGATGCTGCAAGTGAAGATTTAACAGAAAAAGAGTTCTGCGTTAATATTTTAAGAAGCCACGGACTTCTTAGAGGAGATACTCTTAGAGATAATGTGGTTTCCGTTGAAGATGCTGTTACCATTGGTAATAACTACTGTTCCAGGTCATGCAAAATATGTGGTCATTTGGACAGTTCAGTGAAAATGCTTTTATGTGATCATTGTGAAGATTCATATCATCCATATTGCTACAATTCACGTTTGAAAAAAATACCAATTGATGAGTGGTTTTGTCATCCGTGTCTTAATAAAAGGCAGAAAATTCTTAAGGAGACAATTATCAAATCACCAGGCATCAATAGTGAAATGAGGAAATGTAGAACTGTCTCCATTAAGGGTGAAATGAATCCCATACTGTTGATGTTGAGAGACACTGAGCGATATACAAGTGGTGTGCGAGTCGGTAAAGGTTTTCAAGCTGCAGTACCTGACTGGTCAAGCCCTGTAAAAAGTGATGAAGACGACTTTCCAGAACCATTGGAAATTAATCCTTCAGAGTTTTATAGAACGCAGGAAGAAAAAATGAGAAATCCAATTAGAGTCACCATTGGCAATTGGCTTCAATGCCAGGAAGTTATAGATAAAACTAGCGAAACAATATGTGGAAAATGGCGCAGGGCTCCACTATTTGAAGTTCAAACCAATGGCTGGGAGTGCTTCTGTGCTATTCATTGGGATCCATATCACGCTGATTGTTCTGTACCTCAGGAGGTGGAGACAGATGAAATTCAAAAGCAACTGAAGTATATAGAAATGCTGAGACCGCGACTTGCTGCTAAAAAGAGAAAATTAGATTGCACAAATAAAGGTGATTGA 1488 0.3891 MLIQSSLSSVEAGLCNEYNDGENFQCDGIPGGETWQVCLKCNKYSIDWSKKANPMEEDRRNADDPYNSNCVRSSGQPSTASIMTEKTAPNIVYRRKKLRKGSTAPLFKLGPTDVTIANIPSVISSSLHLSSGEDQTTDFVVRHQIELVKEPTLPSVLLAEAAKDITQKKLGIGSVNDSCSSSKSNMALVSGSLDTEMDNSGECSSSGVIGMDAASEDLTEKEFCVNILRSHGLLRGDTLRDNVVSVEDAVTIGNNYCSRSCKICGHLDSSVKMLLCDHCEDSYHPYCYNSRLKKIPIDEWFCHPCLNKRQKILKETIIKSPGINSEMRKCRTVSIKGEMNPILLMLRDTERYTSGVRVGKGFQAAVPDWSSPVKSDEDDFPEPLEINPSEFYRTQEEKMRNPIRVTIGNWLQCQEVIDKTSETICGKWRRAPLFEVQTNGWECFCAIHWDPYHADCSVPQEVETDEIQKQLKYIEMLRPRLAAKKRKLDCTNKGD* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1129 495 Pfam ELM2 domain 356 469 IPR000949 -
Psa5g1129 495 Pfam PHD-finger 261 307 IPR019787 -
Psa5g1129 495 PANTHER REMODELING AND SPACING FACTOR 1 29 488 - -
Psa5g1129 495 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 318 IPR013083 -
Psa5g1129 495 ProSitePatterns Zinc finger PHD-type signature. 261 305 IPR019786 -
Psa5g1129 495 Gene3D - 408 473 - -
Psa5g1129 495 ProSiteProfiles Zinc finger CW-type profile. 404 464 IPR011124 GO:0008270
Psa5g1129 495 ProSiteProfiles Zinc finger PHD-type profile. 258 308 IPR019787 -
Psa5g1129 495 PANTHER HISTONE ACETYLTRANSFERASE 29 488 - -
Psa5g1129 495 SUPERFAMILY FYVE/PHD zinc finger 246 310 IPR011011 -
Psa5g1129 495 SMART PHD_3 260 306 IPR001965 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1129 261 306 C2H2 Transcription Factor Family AT3G01460 43.478 6.78e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa5g1129 ELM2 7.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1129 - - gmx:100813057 693.345