Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1121 ATGGGTAGATCTCCTTGCTGCGAGAAACAACACACAAACAAAGGTGCTTGGACAAAAGAAGAAGATCAACGTCTTATTAACTACATCAAAACTAACGGTGAAGGTTGTTGGAGATCTCTTCCAAAAGCAGCTGGCTTGCTGAGATGTGGCAAGAGTTGTAGACTCAGATGGATTAATTACCTTAGACCTGATCTTAAGAGAGGAAACTTTACTGAACAAGAAGATGATCTTATCATCAATCTCCACAACTTACTTGGAAACAAATGGTCACTAATAGCTGCGAGGTTACCTGGAAGAACCGATAACGAGATTAAGAATTACTGGAACACTCACATCAAGAGAAAACTCTACAACCGTGGAGTCGATCCCCAAACTCATCGGCCGCTTAACGACGCCACGGTGTCCGCTACCATCGCCACCGCGGTTCCACCACAAGCTCAAATCATAACAAGCCATAACAACATTATCATCAAAGATGCTAGCATTGTTAGCAACAGCAATAAAGATAACTATGTCAATACAAAGATTAATGGAACCAAATTGGTTTGTGAAGATTCAAATTCAAATAGCAGTAGCGGAGTTAGCTCTGATCAGGAAGCTTATCAGCATCAACAACTCAACTTGGACCTTTCCATTGGTCTTCCGTCGTCACGTCCTCAAATTAACACACACAGCTTGAAATTACTACAACAACCACAAGATGGTGATGAGCAACAAGAAACAAAGGTTGCTCCTAGTCATGGTGTCTGTCTGTGTTACAGTCTAGGGTTTCTGAGAAACAAAGTGTGTTGCTGCAACAGAGATATAGGTAATACTGTTACTACAGCGGTCACGGATAATAATATGTATAGATTTTATAGACCCATGAATATTTAG 876 0.4087 MGRSPCCEKQHTNKGAWTKEEDQRLINYIKTNGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEQEDDLIINLHNLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYNRGVDPQTHRPLNDATVSATIATAVPPQAQIITSHNNIIIKDASIVSNSNKDNYVNTKINGTKLVCEDSNSNSSSGVSSDQEAYQHQQLNLDLSIGLPSSRPQINTHSLKLLQQPQDGDEQQETKVAPSHGVCLCYSLGFLRNKVCCCNRDIGNTVTTAVTDNNMYRFYRPMNI* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1121 291 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Psa5g1121 291 CDD SANT 69 112 IPR001005 -
Psa5g1121 291 Gene3D - 14 66 - -
Psa5g1121 291 CDD SANT 16 61 IPR001005 -
Psa5g1121 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Psa5g1121 291 SMART sant 66 114 IPR001005 -
Psa5g1121 291 SMART sant 13 63 IPR001005 -
Psa5g1121 291 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Psa5g1121 291 Gene3D - 68 133 - -
Psa5g1121 291 PANTHER TRANSCRIPTION FACTOR MYB7 1 233 - -
Psa5g1121 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Psa5g1121 291 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Psa5g1121 291 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Psa5g1121 291 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Psa5g1121 291 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1121 Psa-Chr5 87189965 87191717 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1121 1 224 MYB Transcription Factor Family AT4G38620 58.667 2.11e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa5g1121 Myb_DNA-binding 1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1121 K09422 - gmx:100808083 378.252