Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1117 ATGAACACTTTCCCTCTCAAATTTCATTTCAATTCCAATTATGCCCTTCCCTACCTCCTCCTTCTTTCCACCACCCTCTTTCCACCGCCGGCCACCGCACAGATTCCGAAATACCTCCCACCGCCACCGGCAGGCAAAATATCCGCGCTCAAATTCGACAAATCCATGGCCATCGTGCTAGTTATCTTAGTCGTCGTGTTTTTCATCCTCGGTTTCCTCTCCGTCTACACTCGCCAGTGCGCAGAACAGAGGATGAGAGGAAGATTCGACCTATCGGTTCCGATCGTCGGTAGCCACCGGAGACACCGTGGACTTGACTCCGAAATCATCGCAACTTTTCCTACCTTCGTTTACTCCGCCGTGAAAGGACACAAAATCGGAAGAGCTGCGCTAGAATGCGCCGTGTGTTTAAACGAATTCCAAGACGACGAAACGCTGCGTTTGATTCCTAATTGTAGCCACGTGTTTCATCCTGAATGCATCGATGCTTGGCTTGTTAATCACTCCACTTGCCCCGTGTGTCGGGCGAATTTAATTCCAAAACCCGGTGACACTTCTTTCGTTTCGGTTCTAATTCCGGATCCGGATATATCCGATTCAGATGACCCGACCCGAATTAATATTGATTCGGAAAACAACAACCTTTCATCTCGTTCTCCTTCTCCTAAGGTGAATTTCAATTATTCAGTTACAGTTACACCGAACCGGATCCGACCGGTTCGGTCAAGTTCGACCGGTTTTAAAATTGGAAGTTGGTTTTCACGGTCACATTCCACGGGTCATTCTCTGGTTCAAGAAGGGGAGAATCACGAGCGGTTCACGTTGAGATTACCGGAGGAGGTGAGGAGCCGGTTGGTGGGTTCGACTCCCAGCCACGTGGTGAGTTGTGGTGTTACTTTTACACGAGAAGGTAGTGGGAGGAGGGGTTTCAGAACGAGGAGTGTGGGAAGTAGTGCTCCTGGGAGGAATAATGAGTGGTTCAACCGGCCGGACCGGAGGGGATTTTCTTGGACGCCACCGTTTATGGGTCGAACCGGTTCAAGTTGGTTGAAGAATAAGTCACCGGGGAAACTGGATGATGTGGGAGAACGGTCTTCTGAACGGTTGTTTGCAGGTAATCAGGTTTAG 1128 0.4973 MNTFPLKFHFNSNYALPYLLLLSTTLFPPPATAQIPKYLPPPPAGKISALKFDKSMAIVLVILVVVFFILGFLSVYTRQCAEQRMRGRFDLSVPIVGSHRRHRGLDSEIIATFPTFVYSAVKGHKIGRAALECAVCLNEFQDDETLRLIPNCSHVFHPECIDAWLVNHSTCPVCRANLIPKPGDTSFVSVLIPDPDISDSDDPTRINIDSENNNLSSRSPSPKVNFNYSVTVTPNRIRPVRSSSTGFKIGSWFSRSHSTGHSLVQEGENHERFTLRLPEEVRSRLVGSTPSHVVSCGVTFTREGSGRRGFRTRSVGSSAPGRNNEWFNRPDRRGFSWTPPFMGRTGSSWLKNKSPGKLDDVGERSSERLFAGNQV* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1117 375 Pfam Ring finger domain 132 175 IPR001841 -
Psa5g1117 375 SMART ring_2 133 174 IPR001841 -
Psa5g1117 375 MobiDBLite consensus disorder prediction 346 375 - -
Psa5g1117 375 CDD RING-H2_PA-TM-RING 132 175 - -
Psa5g1117 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 180 IPR013083 -
Psa5g1117 375 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Psa5g1117 375 PANTHER RING FINGER DOMAIN-CONTAINING 19 299 - -
Psa5g1117 375 MobiDBLite consensus disorder prediction 307 327 - -
Psa5g1117 375 PANTHER RING-H2 FINGER PROTEIN ATL11 19 299 - -
Psa5g1117 375 SUPERFAMILY RING/U-box 127 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1117 Psa-Chr5 86726825 86729604 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1117 18 345 Rapid Response to Elicitors AT3G05200 36.873 1.06e-59 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1117 K10664 - gmx:100815982 337.806