Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1107 ATGCCTCCCAAGCTCGACCCATCCCAAGTCGTCGAAGTTTATGTCCGTGTCACCAGAGGTGAAGTCGGAGCAGCGAGTCCCCTCGCTCCCAAGATTGGTCCCTTCGGTCTCTCCCCGAAAAAGATTGGAGAAGACATCGCTAAGGAAACCTCCAAGGACTGGAAGGGTCTTAGGGTTACCGTCAAGCTCACCGTTCAGAATCGTCAAGCCAATGTAGCTGTTGTTCCATCTGCGGCGGCGTTGGTTATCAAGGCCTTGAAGGAACCAGAGCGTGACAGGAAGAAGACGAAGAACATCAAGCATAACGGTAACATTTCTCTTGACGATGTTATTAAAATTGCTAAGATTATGAAACCTAGGTCAATGGCGAAGGAGCTTGCTGGAACTGTGAAGGAGATCCTAGGGATGTGTGTCTCAGTTGGATGCACTGTTGATAGAAAGTGA 444 0.4932 MPPKLDPSQVVEVYVRVTRGEVGAASPLAPKIGPFGLSPKKIGEDIAKETSKDWKGLRVTVKLTVQNRQANVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIKIAKIMKPRSMAKELAGTVKEILGMCVSVGCTVDRK* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1107 147 Hamap 50S ribosomal protein L11 [rplK]. 9 146 IPR000911 GO:0003735|GO:0005840|GO:0006412
Psa5g1107 147 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 87 IPR036796 -
Psa5g1107 147 PANTHER 60S RIBOSOMAL PROTEIN L12 1 147 IPR000911 GO:0003735|GO:0005840|GO:0006412
Psa5g1107 147 Pfam Ribosomal protein L11, RNA binding domain 75 144 IPR020783 GO:0003735|GO:0005840|GO:0006412
Psa5g1107 147 Gene3D - 82 147 IPR036769 -
Psa5g1107 147 SUPERFAMILY Ribosomal protein L11, C-terminal domain 76 146 IPR036769 -
Psa5g1107 147 Pfam Ribosomal protein L11, N-terminal domain 13 69 IPR020784 -
Psa5g1107 147 Gene3D - 1 81 IPR036796 -
Psa5g1107 147 SMART rl11c 13 145 IPR000911 GO:0003735|GO:0005840|GO:0006412
Psa5g1107 147 PANTHER 60S RIBOSOMAL PROTEIN L12-3 1 147 - -
Psa5g1107 147 CDD Ribosomal_L11 13 144 IPR000911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1107 Psa-Chr5 86150162 86150988 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1107 1 147 Cytoplasmic Ribosomal Protein Gene Family AT5G60670 87.755 5.02e-91 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1107 K02870 - ppp:112283168 265.774