LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa5g1102	ATGGCGGAACAGCCTCTCCCGTTCCAGGATCATGCAATTCCGGTTGTCGACGACGACGAGGACTACACTGGTGGCGATGATACCATGGATGAATTGGAGGAGGAGACGCATGTCAATTCAGTGAAAGCTTCAGCTAGTGCGAATCACGACGGCGTCGTTTTGCCTATAACCCGTACTGGTGAGCTCACTCTTTCTTTCGAGGGTGAGGTTTACGTCTTTCCCGCTGTCACACCTCAGAAGGTTCAAGCTGTTTTGCTGCTTTTGGGAGGACGTGATACGCAGGTGCCTGCTGATGAACATCCATTTGATCAAAGTTATAGGGGCATGAGTGATATTACAAGGCGTCCGAATCTTTCACGAAGAATAGCCTCCTTGGTCAGGTTCCGTGAAAAACGCAAGGAAAGATGTTTTGACAAGAAAATTAGATACACCGTGAGAAAAGAGGTGGCAGAAAGGATGCATCGAGAGAAGGGACAGTTTGCATCTGTGAAGCCAAGCCCTGGTTCCTCTAATTGGTATTCTGCACAGGGTGCCGGTCAAGATGGCACTCCTAATCCTGAAACTCTGCGTAGATGTAAACATTGCGGAGTCAATGAAAATAATACTCCTGCAATGCGCCGCGGACCAGATGGACCGAGAACTTTATGTAATGCGTGCGGGCTCATGTGGGCCAACAAGGGGACACTCAGAGATCTCAGTAAGGGTGGAAGAAGTCTTTCTGTTGAGCAAAGTGGTCTGGATCGTCCTATTGATGTCAAGCCTACTAATCTTGAAGGGGAATTGTCTGTCATCAGAAATGAACAAGGTATTTCTGAAGATCATCCTTCCAAGGCCATTGGTGCTGAAGGTTTGAATAATAACGCATTTAATCCAAGTGATGAGGAATTACCTGTATCTGCAGAGCACTTAGCAAGCACACTGCCATCGGTGATTGATCATTCTTCGGAAAATGATGATGAGCAGGAACCCCTTGTCGAGCTTTCTAATCCTTCAGATACAGGAATGTCTAATCCTTCAGATACAGATATTGACATTCCTGGAAACTTTGATTAG	1053	0.4653	MAEQPLPFQDHAIPVVDDDEDYTGGDDTMDELEEETHVNSVKASASANHDGVVLPITRTGELTLSFEGEVYVFPAVTPQKVQAVLLLLGGRDTQVPADEHPFDQSYRGMSDITRRPNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAERMHREKGQFASVKPSPGSSNWYSAQGAGQDGTPNPETLRRCKHCGVNENNTPAMRRGPDGPRTLCNACGLMWANKGTLRDLSKGGRSLSVEQSGLDRPIDVKPTNLEGELSVIRNEQGISEDHPSKAIGAEGLNNNAFNPSDEELPVSAEHLASTLPSVIDHSSENDDEQEPLVELSNPSDTGMSNPSDTDIDIPGNFD*	351

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa5g1102	350	MobiDBLite	consensus disorder prediction	163	183	-	-
	Psa5g1102	350	PANTHER	GATA TRANSCRIPTION FACTOR 28	4	349	IPR045280	GO:0006355
	Psa5g1102	350	SMART	tify_2	55	90	IPR010399	-
	Psa5g1102	350	SMART	GATA_3	186	239	IPR000679	GO:0006355\|GO:0043565
	Psa5g1102	350	ProSiteProfiles	GATA-type zinc finger domain profile.	186	242	IPR000679	GO:0006355\|GO:0043565
	Psa5g1102	350	MobiDBLite	consensus disorder prediction	302	350	-	-
	Psa5g1102	350	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	185	237	-	-
	Psa5g1102	350	Pfam	CCT motif	121	163	IPR010402	GO:0005515
	Psa5g1102	350	PANTHER	GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1	4	349	-	-
	Psa5g1102	350	MobiDBLite	consensus disorder prediction	1	21	-	-
	Psa5g1102	350	MobiDBLite	consensus disorder prediction	326	343	-	-
	Psa5g1102	350	MobiDBLite	consensus disorder prediction	157	185	-	-
	Psa5g1102	350	CDD	ZnF_GATA	191	238	IPR000679	GO:0006355\|GO:0043565
	Psa5g1102	350	Gene3D	-	185	255	IPR013088	GO:0006355\|GO:0008270
	Psa5g1102	350	ProSiteProfiles	CCT domain profile.	121	163	IPR010402	GO:0005515
	Psa5g1102	350	Pfam	GATA zinc finger	192	228	IPR000679	GO:0006355\|GO:0043565
	Psa5g1102	350	Pfam	tify domain	61	89	IPR010399	-
	Psa5g1102	350	ProSiteProfiles	Tify domain profile.	55	90	IPR010399	-
	Psa5g1102	350	ProSitePatterns	GATA-type zinc finger domain.	192	219	IPR000679	GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa5g1102	Psa-Chr5	85890798	85900143	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa5g1102	6	234	Tify Gene Family	AT1G51600	47.967	2.28e-60	194

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-GATA	Psa5g1102		CCT	3.2e-15	CL0281

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa5g1102	-		-	gmx:100801328	469.929