Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1100 ATGACATCATATTTTCAGCCATTATTGTTGTGGACTGGGGCAATGCTCATATGCAGGGCATTAGATCCAATTGTCCTGCCATCTCCGAATAGCCAGGTTGTTAAGCAACGACTGCTCAATTTTGTGAGATCTTTGTCAACAGTGATTTCATTTGCATACTGTTTATCAAGCTTAATTCAACAAGCTCAAAAATTCTTTTTGGAGGCAAATGAATCCAGTGATGCAAGAAATATGGGCCTTGATTTTGCTGGGAAGGCAATATACACTGCTGTATGGGTTGCTGCTGTGTCATTGTTCATGGAATTGCTAGGTTTCTCCACACAGAAGTGGCTAACTGCTGGTGGTTTGGGCACAGTATTGCTCACTCTTGCCGGTCGAGAGATATTTACGAACTTCCTGTCAAGTATAATGATCCACGCAACTCGGCCATTTATATTGAATGAGTGGATTCAAACAAAGATTGAAGGATATGAGGTTTCTGGCACTGTTGAGCATGTGGGCTGGTGGTCACCGACCATTATTAGAGGTGATGATCGTGAAGCAGTTCATATTCCTAATCACAAGTTCACTGTCAATGTTGTGAGAAATTTGACTCAGAAATCACATTGGCGTATCAAGAGTTACATTTCTATCAGTCATTTGGATGTTAACAAAATTAACAGTATTGTAGCAGATATGCGCAAGGTTTTGGCTAAAAACCCTCAAGTTGAGCAGCAGAAATTGCACAGAAGGGTATTTTTGGAAGACATCAATCCTGAAAACCAAGCTCTAAAGATATTGATATCTTGCTTTGTGAAGACTCCATATTTTGAGGAGTACCTCTGTGTTAAGGAGGCAATCCTTTTGGATCTTCTCAGAGTTGTCAGTCATCATCGAGCTCGGTTAGCCACTCCCATCCGCACAGTTCAGAAAATATACAGTGAGCCTACCTCAAAAAATATTCCCTTTGGCGATGACATTTTTACTCAATCCAGAGCAGCAGTAAATCGCCCATTCCTACTAATAGAACCCCCATATAAAGTTAATGGTGAAGATAAAGTTAAGCCGTCAACTCGATCAACTCGTGGCAATGAGGAAAAAGATGCTAAGATAGAGGAACCAGTGGCATCTGACTCCAAAAGTGATGACAATTTTGCAGGAACACCATCCTCTCCACCTGGTGCAAACTCCAAGGATAGTTCAGTGGAGAAGACCACCAAAACCATGCAGCCTAAAAAAGATAGCGCTGGAGATGTAGGGAGGGGAAGTACAATTCCTGTATCTAAAAACCTTGCACAAAGTACTGTATCTGAAACTTCTCCTGTTACTTCCCCCGAGTCTAGCAGGGAAGAGATTTCTTCTGCTACTGAGGACAAATCTTCTGTGTCATCATCACCAGTTAGGCCTCCCTTAGACGAGAATATTCTTCTTGGGGTTGCACTTGAAGGCTCAAAACGTACCCTTCCAATTGAGGATGAAGTTAGTCCATCTCCTAACTCGTCTGAGTCACAGGAATTTGCCGTCCAACGAAATGGGAATGGACCTCCTGCTAACAAAGATAAGAAGGATGGTCCAATATCCTGA 1563 0.4223 MTSYFQPLLLWTGAMLICRALDPIVLPSPNSQVVKQRLLNFVRSLSTVISFAYCLSSLIQQAQKFFLEANESSDARNMGLDFAGKAIYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSIMIHATRPFILNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLTQKSHWRIKSYISISHLDVNKINSIVADMRKVLAKNPQVEQQKLHRRVFLEDINPENQALKILISCFVKTPYFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYSEPTSKNIPFGDDIFTQSRAAVNRPFLLIEPPYKVNGEDKVKPSTRSTRGNEEKDAKIEEPVASDSKSDDNFAGTPSSPPGANSKDSSVEKTTKTMQPKKDSAGDVGRGSTIPVSKNLAQSTVSETSPVTSPESSREEISSATEDKSSVSSSPVRPPLDENILLGVALEGSKRTLPIEDEVSPSPNSSESQEFAVQRNGNGPPANKDKKDGPIS* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1100 520 Gene3D - 40 142 - -
Psa5g1100 520 SUPERFAMILY Sm-like ribonucleoproteins 128 198 IPR010920 -
Psa5g1100 520 MobiDBLite consensus disorder prediction 419 443 - -
Psa5g1100 520 MobiDBLite consensus disorder prediction 343 520 - -
Psa5g1100 520 MobiDBLite consensus disorder prediction 374 397 - -
Psa5g1100 520 Pfam Mechanosensitive ion channel 85 292 IPR006685 GO:0016020|GO:0055085
Psa5g1100 520 MobiDBLite consensus disorder prediction 486 504 - -
Psa5g1100 520 Gene3D - 144 199 IPR023408 -
Psa5g1100 520 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 518 IPR045042 -
Psa5g1100 520 MobiDBLite consensus disorder prediction 343 372 - -
Psa5g1100 520 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1100 Psa-Chr5 85849670 85854575 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1100 1 516 Mechanosensitive Ion Channel Family AT5G10490 63.671 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1100 K22047 - gmx:100796022 827.394