Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1097 ATGGTGACAAACAACCACCGCCACCACATGGCTCCTTCACCTTCATTCTTCAAAACTCTCACTCTATTATTACTACTATCGCAACACTTTTTAACCCTTGTTATTGCTTTTACGCAGAACAACACAGAAACCAGTCCACCTCCGTCTCCCGTTCCCGATGAAGCCACCACCAATTCTCAACCTCAACGAATAAAACCAAGCGTCGCTATTCTCGTCTGCGTTTTCACCGTGCTCTTTTCTCTCACCTCGGTCCTCCTTCTCTACGTGAAACACGTTAATTACATCGCCAACACCGGCGAGATAGTTAATATCGAAAACGGCGGAGCCTCGTATTTTAACGGCGGAAGAAAAAACTCCGGGATAGACCGTTCGGTAGTTGAATCGTTGCCGATTTTCAGATTCGGATCACTTACAGGTCAAAAGGACGGTCTAGATTGTGCGGTTTGTCTATGTAAATTCGAATCCTCGCAAGTTTTACGGTTATTGCCGAAATGCAAACACGCTTTTCATGTGGAGTGTGTTGATACATGGCTGGATGCACATTCAACTTGTCCTCTTTGCCGTTCTAGAGTCGATCCTGAAGATGTTCTTCTCGTAGTGGAAGATTCTTCTTCATCATCAACAACAACACTGCGGGAGATTCACAATCAGAATCAGAAAGAAGAAGAAAATGATCATGCTATGGAAATTGAAATTGAAAGAGGAAGAATGTGGAGAAACGAGATTGTAGAGAATTATCGAAAGAGACATTCGTCGGTAGGGGAAAAGGAATGGGAAGGAGAACGAGAAAGGAAGAAAACGGCGTCGTTTAGATGGTCTCTGGATAGTTCTAGAAAGAAGAGCGAGAGTAGCATTGGGCTTGGGCTGGGTTGTTTTGCTGGGCCGAGAAAAGACGGGATGTTGTTAACGAAAGAAGAGAGTAGCGTGGAAAGGAGAAAAAGGTTGGAGCACCGGATAATTGTGTCACCGAAGGTGAGAAGTGGGCTCCACCAGAATCAACGGTGGAGTGATGTGCAACCGTGTGATATGCTGTATCTAACATCAGAGATGATGATAATGAGTGGAGTAAAGAATGTGAATAGGAGGAATAATGAAAGTAGTTGGAATGGCAGGGGAGTAATTAATTCGAGAAGTGTGTCTGAAATCACGGGACTCAGCAGGTTCCAAAGCAACAACACACAGCAATAA 1188 0.4436 MVTNNHRHHMAPSPSFFKTLTLLLLLSQHFLTLVIAFTQNNTETSPPPSPVPDEATTNSQPQRIKPSVAILVCVFTVLFSLTSVLLLYVKHVNYIANTGEIVNIENGGASYFNGGRKNSGIDRSVVESLPIFRFGSLTGQKDGLDCAVCLCKFESSQVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRSRVDPEDVLLVVEDSSSSSTTTLREIHNQNQKEEENDHAMEIEIERGRMWRNEIVENYRKRHSSVGEKEWEGERERKKTASFRWSLDSSRKKSESSIGLGLGCFAGPRKDGMLLTKEESSVERRKRLEHRIIVSPKVRSGLHQNQRWSDVQPCDMLYLTSEMMIMSGVKNVNRRNNESSWNGRGVINSRSVSEITGLSRFQSNNTQQ* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1097 395 Pfam Ring finger domain 145 188 IPR001841 -
Psa5g1097 395 SMART ring_2 146 187 IPR001841 -
Psa5g1097 395 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 41 394 - -
Psa5g1097 395 PANTHER RING-H2 FINGER PROTEIN ATL43 41 394 - -
Psa5g1097 395 SUPERFAMILY RING/U-box 127 193 - -
Psa5g1097 395 CDD RING-H2_PA-TM-RING 145 188 - -
Psa5g1097 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 195 IPR013083 -
Psa5g1097 395 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1097 Psa-Chr5 85706422 85708786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1097 64 387 C3H Transcription Factor Family AT5G05810 46.532 8.80e-73 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1097 K19041 - gmx:100794083 279.641