Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1088 ATGATAAGGTTTAGTTCGTATTACAGTACTGGCAATACCACCAATACTACTACCACTGTTACTATCCTTCTTCTTGCGCTTCTGTTACACAACTCCTCTACCCACCTTGTCCTCGCAACATCTAGTTCCATCGTCAAGTTCCTTCCTGGTTTTCAAGGACCTCTTCCTTTCCTACTAGAAACTGGCTACATTCAAGTCGGTGAAAATGATGATACTGCTGAAGTGTTCTACTACTTCATAGAGTCTGAGAATAATCCTAAGGAAGATCCTCTCTTGCTTTGGCTTACCGGCGGTCCTGGTTGCTCCTCCCTTACTGGTCTAGCATTTGAAATAGGTCCAATAGCATTTAAAAATGAAGAATACAACGGAAGCTTACCAAATTTGGTATTGAAGCCTCATTCATGGACAAAGGTAAGTAGTATTATATTTTTGGATTTGCCTGTGGGTACTGGATTCTCTTATCCCAATACACAAAAAGCTGCTCAACAAAGCACGTCGAAGCTTGTTCACAACGCACATCAATTTCTTAGGAAGTGGCTGATTGATCATCCACAATTCATCTCAAATCAAGTGTACATTGCTGGTGACTCATATTCTGGCCTACCTGTCCCAGTTATTGTTCAAGAGATTTCAGATGGAAATGAAGGTGGTCTCCAACCATGGATAAACCTTCAAGGATATATACTAGGAAATCCTGTAACAACACCAGACTACAAAAGTTACGAAATACCATTTAATCATGGCATGGCAATGATTTCTAATGAACTTTACGAGTCATTACTGAAGAACTGTGGAGGCGAGTATACAAAAATAGATCCTCAAAACGTGCTTTGTCTAAAAGACCTTCAATCCTACCAAGAGACTATTTCAGGAGTGAATCCAGTTCATATTTTGGAACCAAATTGTGAGGTTGATTGGTATGATTCACGTGAACTTTCTAGAAAAATGCTTCTGATTCAAAATGCTTCTCCCACACTGCCACCTTTAAGTTGTCGGAGTTATGGATATATTCTCGGTAGCTATTGGGCTAACGATGACAATGTTCGCAATGCGCTACACATACGAAAGGGAAGTATAAGAAAATGGAATCGATGTGATTTTAGCATTCCTTTTAAGCATGAAGTCATTAACAGCTTCCCCTATCATGTAAATCTTAGTCGAAAAGGTTATCGTTCATTAATATACAGTGGGGATCATGACATGATCGTTCCATTCTTGCATACTCAAGCATGGATAGCATCTTTAAACTACTCCATAGTCGATGATTGGAGGCAATGGTATTCGAATGGTCAAGGGGGAGGACATACGGCTCCGGAGTACAAGCCTAAAGAATGCTTCGCCATGTTGAGTAGGTGGCTATCGAATAAGAAAATCTAA 1377 0.4001 MIRFSSYYSTGNTTNTTTTVTILLLALLLHNSSTHLVLATSSSIVKFLPGFQGPLPFLLETGYIQVGENDDTAEVFYYFIESENNPKEDPLLLWLTGGPGCSSLTGLAFEIGPIAFKNEEYNGSLPNLVLKPHSWTKVSSIIFLDLPVGTGFSYPNTQKAAQQSTSKLVHNAHQFLRKWLIDHPQFISNQVYIAGDSYSGLPVPVIVQEISDGNEGGLQPWINLQGYILGNPVTTPDYKSYEIPFNHGMAMISNELYESLLKNCGGEYTKIDPQNVLCLKDLQSYQETISGVNPVHILEPNCEVDWYDSRELSRKMLLIQNASPTLPPLSCRSYGYILGSYWANDDNVRNALHIRKGSIRKWNRCDFSIPFKHEVINSFPYHVNLSRKGYRSLIYSGDHDMIVPFLHTQAWIASLNYSIVDDWRQWYSNGQGGGHTAPEYKPKECFAMLSRWLSNKKI* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1088 458 Gene3D alpha/beta hydrolase 55 458 IPR029058 -
Psa5g1088 458 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 23 457 IPR001563 GO:0004185|GO:0006508
Psa5g1088 458 SUPERFAMILY alpha/beta-Hydrolases 45 456 IPR029058 -
Psa5g1088 458 Pfam Serine carboxypeptidase 49 428 IPR001563 GO:0004185|GO:0006508
Psa5g1088 458 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 143 IPR001563 GO:0004185|GO:0006508
Psa5g1088 458 PRINTS Carboxypeptidase C serine protease (S10) family signature 144 154 IPR001563 GO:0004185|GO:0006508
Psa5g1088 458 PRINTS Carboxypeptidase C serine protease (S10) family signature 179 204 IPR001563 GO:0004185|GO:0006508
Psa5g1088 458 PRINTS Carboxypeptidase C serine protease (S10) family signature 425 438 IPR001563 GO:0004185|GO:0006508
Psa5g1088 458 PANTHER 1-O-ACYLGLUCOSE:ANTHOCYANIN ACYLTRANSFERASE 23 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1088 Psa-Chr5 84624280 84644445 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1088 39 68 Calmodulin-binding Proteins AT2G22960 73.333 1.38e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1088 K16296 - gmx:100792006 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1088 5 84624280 84644445 Psa5g1088 5 84624280 84644445 ECH