Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1073 ATGGAATTTGACGAACACGAAGAAGATCAAGAGGAGGAGGAAGAGGAAGAAGAAGAAATGGGGTTCCCGGTTACGCCGGTTGCAGGTTACGACTCGCTTGGAAACTCCGGCGTACGGTCTAAAATGAGCGGCGGGACTATGGAAACCGATGGAGCAGCAGTCATTCCTACAGGCGGTGTTCTGAAAAACGGGCCCAAAGGGACAGTCAGATACAGAGAATGTCAAAAGAATCACGCCGTGAGTATAGGTGGTCACGCCGTTGACGGTTGTTGCGAGTTTTTAGCTGCAGGTGAAGAAGGAACACTGGAAGCCGTAATTTGCGCAGCTTGTAACTGTCACCGTAACTTCCACCGCAAAGAGATCGACGGCGAGGTCATTTCCCATAATCATCAACCGCGGTCTCACTCTCAGACTCAGTACCACCACCATCAGTTATCTCCTTACTACCACCGTGCAGCGCTACCTCCTCCACCAGGATACCACCAATTATTAACTCCACCGCCGGTTTCACATCATCGTCCGTTAGCTCTTCCTCCTGTCGCATCCAGTGGAGGATTCAGTAGAGAAGACGACGACGTGTCAATTCCAAGCAGCAGCGGCGGCGGCGGGAGTGGAACGAAGAAAAGGTTTAGGACGAAGTTCACACAGGAGCAGAAAGATAAGATGCTAGCATTTGCGGAGGGAATTGGATGGAGAATCCAGAAAGAAGACGAAGCTGCAATTGAACAATTCTGTGCTGAGAATTACATCAAGAGAAATGTGCTTAAGGTTTGGATGCACAATAACAAGCACACTCTTGGTAAGAAACCCTAA 813 0.4957 MEFDEHEEDQEEEEEEEEEMGFPVTPVAGYDSLGNSGVRSKMSGGTMETDGAAVIPTGGVLKNGPKGTVRYRECQKNHAVSIGGHAVDGCCEFLAAGEEGTLEAVICAACNCHRNFHRKEIDGEVISHNHQPRSHSQTQYHHHQLSPYYHRAALPPPPGYHQLLTPPPVSHHRPLALPPVASSGGFSREDDDVSIPSSSGGGGSGTKKRFRTKFTQEQKDKMLAFAEGIGWRIQKEDEAAIEQFCAENYIKRNVLKVWMHNNKHTLGKKP* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1073 270 MobiDBLite consensus disorder prediction 186 210 - -
Psa5g1073 270 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 70 121 IPR006456 -
Psa5g1073 270 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 207 263 IPR006455 -
Psa5g1073 270 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 71 120 IPR006456 -
Psa5g1073 270 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 63 269 - -
Psa5g1073 270 SUPERFAMILY Homeodomain-like 196 268 IPR009057 -
Psa5g1073 270 MobiDBLite consensus disorder prediction 1 21 - -
Psa5g1073 270 Pfam ZF-HD protein dimerisation region 69 121 IPR006456 -
Psa5g1073 270 Gene3D - 194 267 - -
Psa5g1073 270 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 63 269 - -
Psa5g1073 270 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1073 Psa-Chr5 83659706 83662069 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1073 12 266 ZF-HD Transcription Factor Family AT4G24660 47.490 6.30e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Psa5g1073 ZF-HD_dimer 2.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1073 - - gmx:100820567 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1073 5 83659706 83662069 Psa5g1073 5 83659706 83662069 ECH
Psa2g1552 2 120831605 120834055 Psa5g1073 5 83659706 83662069 PCT