Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1068 ATGGCACCTAGTTTTGATTGTGCTTCTAGTCTTCTTTGCACCGAGGATACCAGTGTTTTCGATGATGCTGAATATCAGGGTACTGTTGAGGTCTACGAGGATTCCTGGCGTCCTAGCTTCGATCATCGGAGGGGTCAAGATGACTTTGGGGGTGTTGCCGATGAGTTGCCATTACAGAGTGAAGAGTGTTTCAGGCTGATGTTGGAAAAGGAATGGCAACAATGGGTTGGTGAGGATTACTTGAATAGATTTCACTTTGGGGATTTGGATTTTGGTGCTAGAAATGAAGCAATTGATTGGATTCTAAAGGTTGTTGCCCATTTCGGTTTCGGTCCGTTGTGTGCTTATCTATCTATTAATTACATGGATCGGTTCCTTTCCGCGTATGAATTACCAAAGGGGCGAGTTTGGACAATGCAATTGTTGGCTATAGCTTGTTTATCTTTGGCAGCCAAATTAGAGGAAACCGATGTTCCTATGATTCTTGATTTGCAGATTGGTGAATCCAAGTTTCTATTTGAAGCTAAAACTATTCAGAGAATGGAGCTTCTTGTGCTAAGCACATTGAAGTGGAGAATGCAATCAATTACTCCTTTCTCATTCATTGAATATTTCCTTACTAAGATTAATGATAATGATAAGAGTTCATTAAGTTCTTCCATTTCCCAATCCACTAAACTCATATCGAACACCGTTAAAGGAATTGAATTCTTGGAATTCAAACCATCAGAGATTGCAGCAGCATTGGCTACATATGTTGTGGGCGAAACACAAGCAATAGATGCTAGCAAATCAATATCTACTCTGACTCAATACATAGAAAAGGAGAGATTAATGAAGTGTGTTGAAAAGATCGAAGCAATGTCATTGAACAGTGTTGTGACTGGCAAGAATTCAAGTGCGTCTGTCCCTAGTGTGCCACAAAGTCCAATAGGTGTGTTGGATACAACATTGTGTTTCAGCTACAAGAGTGATGACACCACCAATGGTGGTGATGGTCCATGTTCTTCTTCACATAATACTAGTCCAGATGCTAAGAGGAGGAAGCTAAACAAAGGCTGTGAATCAGAGCTTTTGTAG 1080 0.4056 MAPSFDCASSLLCTEDTSVFDDAEYQGTVEVYEDSWRPSFDHRRGQDDFGGVADELPLQSEECFRLMLEKEWQQWVGEDYLNRFHFGDLDFGARNEAIDWILKVVAHFGFGPLCAYLSINYMDRFLSAYELPKGRVWTMQLLAIACLSLAAKLEETDVPMILDLQIGESKFLFEAKTIQRMELLVLSTLKWRMQSITPFSFIEYFLTKINDNDKSSLSSSISQSTKLISNTVKGIEFLEFKPSEIAAALATYVVGETQAIDASKSISTLTQYIEKERLMKCVEKIEAMSLNSVVTGKNSSASVPSVPQSPIGVLDTTLCFSYKSDDTTNGGDGPCSSSHNTSPDAKRRKLNKGCESELL* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1068 359 SMART cyclin_7 99 187 IPR013763 -
Psa5g1068 359 SUPERFAMILY Cyclin-like 59 193 IPR036915 -
Psa5g1068 359 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 1 351 - -
Psa5g1068 359 SUPERFAMILY Cyclin-like 178 289 IPR036915 -
Psa5g1068 359 PANTHER CYCLINS 1 351 IPR039361 -
Psa5g1068 359 Pfam Cyclin, C-terminal domain 196 292 IPR004367 -
Psa5g1068 359 ProSitePatterns Cyclins signature. 94 125 IPR006671 -
Psa5g1068 359 Gene3D - 67 285 - -
Psa5g1068 359 MobiDBLite consensus disorder prediction 329 359 - -
Psa5g1068 359 Gene3D - 77 194 - -
Psa5g1068 359 CDD CYCLIN 94 186 IPR013763 -
Psa5g1068 359 SMART Cyclin_C_2 196 322 IPR004367 -
Psa5g1068 359 MobiDBLite consensus disorder prediction 342 359 - -
Psa5g1068 359 Pfam Cyclin, N-terminal domain 63 193 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1068 Psa-Chr5 83025140 83028029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1068 47 328 Core Cell Cycle Gene Families AT2G22490 47.297 5.39e-87 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1068 K18810 - gmx:100803873 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1068 5 83025140 83028029 Psa5g1068 5 83025140 83028029 ECH