Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1049 ATGAATATGAATTTTGAAGCAATGAATAGAAGCTCTTCTACAACTACTTCTTCATCGGATTCTTGTTCTTCGGAATCAAATCCGTTGAATCGAAACAAAGTAGATAGGATCAAAGGTCCATGGAGTGCTGAAGAAGATAGAATTCTAACGCGGCTTGTGGAGCAACACGGAGCGAGAAACTGGTCGCTTATTAGCCGCTATATTAAGGGGAGGTCCGGTAAGTCTTGCCGACTCCGCTGGTGTAATCAGCTGAGTCCAACGGTGGAGCACCGGCCATTCTCGTCGCAAGAGGATGAAACTATCATAGCCGCGCATGGTCAATACGGTAACCGTTGGGCAACCATTGCGCGTCTTTTACCGGGTCGGACCGATAATGCTGTGAAGAATCATTGGAACTCGACGCTTAAGAGAAGAGCAAGTGGTCGCGGTTGTGGCGATAGTGGTGGTGGTGGTGGTGGAGATTCTGTTACGGTGAACGGGGGTTTGGGAAATCCTACCGGTCCGTTTGCTCGATCTTGTTTTCCGGTGGAGGATGATCCGTTGACCGCGTTGACTCTTGCTCCTCCGGGGAATGTTTATGGCGGTGGTCTGGAAGAACAGGACGAGGCGGTTGCTGATCATCGACCGTCACCGTCGCCGGAAAGTGTTCCGTCGGCGTTCTGGGATGTGATGAGAGGTGTGATTGCGAAGGAAGTTAGGGAATATGTTTCTTCTAATTTTTCTCATAACAATGGTTTTCATTGA 744 0.4919 MNMNFEAMNRSSSTTTSSSDSCSSESNPLNRNKVDRIKGPWSAEEDRILTRLVEQHGARNWSLISRYIKGRSGKSCRLRWCNQLSPTVEHRPFSSQEDETIIAAHGQYGNRWATIARLLPGRTDNAVKNHWNSTLKRRASGRGCGDSGGGGGGDSVTVNGGLGNPTGPFARSCFPVEDDPLTALTLAPPGNVYGGGLEEQDEAVADHRPSPSPESVPSAFWDVMRGVIAKEVREYVSSNFSHNNGFH* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1049 247 MobiDBLite consensus disorder prediction 1 30 - -
Psa5g1049 247 Gene3D - 37 89 - -
Psa5g1049 247 ProSiteProfiles Myb-like domain profile. 33 84 IPR001005 -
Psa5g1049 247 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Psa5g1049 247 CDD SANT 92 135 IPR001005 -
Psa5g1049 247 SMART sant 89 137 IPR001005 -
Psa5g1049 247 SMART sant 37 86 IPR001005 -
Psa5g1049 247 MobiDBLite consensus disorder prediction 1 36 - -
Psa5g1049 247 Gene3D - 92 138 - -
Psa5g1049 247 PANTHER MYB TRANSCRIPTION FACTOR 3 233 - -
Psa5g1049 247 CDD SANT 40 82 IPR001005 -
Psa5g1049 247 Pfam Myb-like DNA-binding domain 41 99 - -
Psa5g1049 247 PANTHER MYB PROTEIN-RELATED 3 233 - -
Psa5g1049 247 SUPERFAMILY Homeodomain-like 35 131 IPR009057 -
Psa5g1049 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 88 IPR017930 -
Psa5g1049 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 139 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1049 Psa-Chr5 81020406 81023123 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1049 26 169 MYB Transcription Factor Family AT4G37260 63.871 4.63e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa5g1049 Myb_DNA-bind_6 1.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1049 - - gmx:778051 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1049 5 81020406 81023123 Psa5g1049 5 81020406 81023123 ECH