Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1035 ATGCAATCAACAACCGGTTCTGAATCGAAACCGACCGAACAGAGTAATCAAACTCCACAACGGCCACCGAAAACGCCGCCGCATTCGATTACAGTTCCGCCGCCACATCAACAGTGGGTTCCGATGCAATACCCGCCGGCGGCAATGGTAATGCCGCACCATATGTTACCGCCGCAACATTATGCACCGCCACCGCATCATTATGTGCCTTATCATCACTATCAGCAACACGTGCCTCACGTGCATCAAGGATCTAGTGTTGCTGAGAATAAGACGATCTGGGTCGGTGATTTGCAGCATTGGATGGATGAGAATTATCTTCACCGGTGTTTCGCTTCTAACGGCGAGATTTTCTCAATTAAGGTTATTCGGAATAAGCAAACTGGTCAACCGGAGGGTTATGGATTTGTGGAATTTCATTCACATGTGATCGCTGAGAATGTTTTAGTGAATTATGCTGGGATGTTGATGCCTAACACAGACCAACCTTTTCGCCTTAACTGGGCAACATTTAGCACAGGAGATCACAAACGATCAGATAATGTCCCTGATCTTTCTCTTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGCACATTGCTTGAAATTTTTTCTAATAAGTACCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACCGGCCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGGTCTAAGGCCTTGAGTGAAATGAATGGTGTTTATTGTTCTAGTAGGCCTATGCGAATTGGTGCTGCAACTCCTAGAAAATCCTCTGGCTATCAACAAGGAGGCCACTCAAATGCCACATCCAACCAATCTGAAGGCGATTCTACAAATACAACTATATTTGTTGGAGGACTTGACCCTAGTGCTACTGCTGAAGATCTTAGACAACCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAAGGATGTGGTTTTGTACAATTTGCCAACAGAAATAATGCAGAAGAGGCATTGCAAAAGCTAAATGGTGCAACAGTTGGCAAGCAAACTGTTCGCCTTTCTTGGGGCCGCAATCCGGCAAATAAGCAGCATAGAATGGATTTTGGTAGTCCCTGGAATGGGGCCTATTACGGGGGAGGACCTGTCTATGATGGTTATGGATATGCTTTGCCGCACCCTCATGACCCGGGCATGTATGCTGCTGCTTATGGGGCTTACCCCATTTATGGAGGACATCAACAGCAAGTAAGCTAA 1266 0.451 MQSTTGSESKPTEQSNQTPQRPPKTPPHSITVPPPHQQWVPMQYPPAAMVMPHHMLPPQHYAPPPHHYVPYHHYQQHVPHVHQGSSVAENKTIWVGDLQHWMDENYLHRCFASNGEIFSIKVIRNKQTGQPEGYGFVEFHSHVIAENVLVNYAGMLMPNTDQPFRLNWATFSTGDHKRSDNVPDLSLFVGDLAADVTDSTLLEIFSNKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSKALSEMNGVYCSSRPMRIGAATPRKSSGYQQGGHSNATSNQSEGDSTNTTIFVGGLDPSATAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGATVGKQTVRLSWGRNPANKQHRMDFGSPWNGAYYGGGPVYDGYGYALPHPHDPGMYAAAYGAYPIYGGHQQQVS* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1035 421 CDD RRM3_NGR1_NAM8_like 289 360 - -
Psa5g1035 421 Gene3D - 278 392 IPR012677 -
Psa5g1035 421 CDD RRM1_SECp43_like 92 172 - -
Psa5g1035 421 MobiDBLite consensus disorder prediction 263 287 - -
Psa5g1035 421 SUPERFAMILY RNA-binding domain, RBD 184 363 IPR035979 GO:0003676
Psa5g1035 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 362 IPR000504 GO:0003723
Psa5g1035 421 CDD RRM2_SECp43_like 184 263 - -
Psa5g1035 421 MobiDBLite consensus disorder prediction 1 19 - -
Psa5g1035 421 Gene3D - 90 170 IPR012677 -
Psa5g1035 421 MobiDBLite consensus disorder prediction 265 287 - -
Psa5g1035 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 264 IPR000504 GO:0003723
Psa5g1035 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 171 IPR000504 GO:0003723
Psa5g1035 421 MobiDBLite consensus disorder prediction 1 32 - -
Psa5g1035 421 SMART rrm1_1 186 260 IPR000504 GO:0003723
Psa5g1035 421 SMART rrm1_1 291 358 IPR000504 GO:0003723
Psa5g1035 421 SMART rrm1_1 92 167 IPR000504 GO:0003723
Psa5g1035 421 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 31 420 - -
Psa5g1035 421 Gene3D - 172 277 IPR012677 -
Psa5g1035 421 SUPERFAMILY RNA-binding domain, RBD 51 172 IPR035979 GO:0003676
Psa5g1035 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 256 IPR000504 GO:0003723
Psa5g1035 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 355 IPR000504 GO:0003723
Psa5g1035 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 159 IPR000504 GO:0003723
Psa5g1035 421 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 31 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1035 Psa-Chr5 79094043 79097742 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1035 67 370 Eukaryotic Initiation Factors Gene Family AT4G34110 27.937 3.12e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1035 - - gmx:100785454 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1035 5 79094043 79097742 Psa5g1035 5 79094043 79097742 ECH