Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1025 ATGAAATCCATGAATGACACTAACAATAACAACTCTGATGACAGAAACAATAATCATAACAACAACTGGTTGGGTTTCTCACTCTCACCCCATCATCATCATCATTACCAACAAACCCAAAACTCTTCCGTTTCCAACACTGTTCCTACTGCTTTCTATTTATCACCTTCTCATTTCACCAACTCACCTATCTGTTATGGTGTTCCTGACAATCCTAACTTTCATTCATCTTTGTCTGTTATGCCTCTTAAATCAGATGGCTCTCTTTGTATCATGGAAGCTCTTGGTAGATCACAATCACAAGTGATGGTGTCATCTTCATCTCCTAAACTTGAAGACTTTCTCGGTGGTGCAACAATGGGGACTCATGATGATTATGGTAGCCATGAAAGAGATGCGGCAATGGCTTTAAGCTTAGACAGTATCTACTACAATAACCAACAAAATGCAGATCCTCATCAACAACAACATAGCCACATGACATCACATCCATATTATGCAGCACTTGGTTTCCATGGAATGTTTCAAACACCATTAGAGGCTGAATCAAAGGAAACAACAGCAACAGCAACAACAACAGCAAACCATGTTGATGTTTGTACCTCCCAAATGCCGCAAAACTGGTTCTCTCAAAGAGATTATTCTTCAGCTTCCCATGCTTCTCAGACTCTTGAGCAACAAATGAACACAAACATGGGAAACAACAATGGTGGTGGTTCTATTGTTGGTGGTTCTGTTGGGTGTGGTGAGTTACAATCTCTAAGCCTATCAATGAGTCCTGGTTCTCAATCTAGCTGCGTTACTGCTCCTACACAGATCTCACCTTCTGCAACTGAATCAGTCACCATGGAAGCTAAAAAAAGAGGTGCTGCTAAGCTTGGACAGAAACAACCTGTTCATAGAAAATCTATCGACACTTTTGGACAGAGAACTTCACAGTATAGAGGTGTCACAAGGCATAGATGGACTGGTAGATATGAAGCACATTTATGGGATAACAGTTGCAAGAAAGAAGGTCAAACAAGAAAAGGAAGACAAGTTTATTTGGGAGGTTATGATATGGAAGAGAAAGCTGCAAGAGCTTATGATCAAGCAGCACTTAAATATTGGGGGCCTTCAACTCATATAAACTTCCCACTAGAAAATTATCAAACTCAGCTTGAAGAAATGAAGAACATGACTAGGCAAGAATATGTTGCTCATTTGAGAAGAAAAAGCAGTGGATTTTCCAGGGGTGCTTCAATGTACAGAGGAGTGACAAGACACCACCAACATGGTAGGTGGCAAGCAAGGATTGGAAGAGTTGCTGGTAACAAAGATCTTTATCTTGGAACATTCAGCACTCAAGAGGAAGCAGCAGAAGCATATGATGTAGCAGCAATTAAATTCCGTGGCTCGAACGCGGTAACGAATTTCGACATATCTAAATACGAAGTCGAAAAAATCATGGCTAGCAATACTCTTCTATCTGGTGACCAAGCAAGAAGAATCAAACAAAATGTTCCTAGAGCCGATGTTCACGAATATAACGACACAAACGTAACGAGCCAGAACAACGGAGAAGCTGATCAAGCGCGAAACAGCAACGAAAGTAATGATTCAAAATGGAAGATGGTGTCAAATGGTTGTGACCAAAAAAACTCTGCTGGAAATTTCAAGAATTCTGATTTTTCGATGTCTTTACAAGACCTTGTTGGTTTAGACGATTCGACAAAGATCGGTACTCATTTTTCGAACCCGTCTTCATTGGTGACAAGCTTAAGCTCTTCTAGAGAAGCTAGTCCTGATAAAACCGCTCCTTCTCAACTCTTTCCAAAGCCTTCAATGGAATCAAAGATTGGTTCTAGCATTGGTGTTACTAGTTCTTGGTTTCCTTCCCAAGTAACAACTCAAATGAGACCAACTTCATCTATCAATTTGTCACATTTTCCTGTTTTTGCTGCATGGAATGATGCTTAG 1959 0.4033 MKSMNDTNNNNSDDRNNNHNNNWLGFSLSPHHHHHYQQTQNSSVSNTVPTAFYLSPSHFTNSPICYGVPDNPNFHSSLSVMPLKSDGSLCIMEALGRSQSQVMVSSSSPKLEDFLGGATMGTHDDYGSHERDAAMALSLDSIYYNNQQNADPHQQQHSHMTSHPYYAALGFHGMFQTPLEAESKETTATATTTANHVDVCTSQMPQNWFSQRDYSSASHASQTLEQQMNTNMGNNNGGGSIVGGSVGCGELQSLSLSMSPGSQSSCVTAPTQISPSATESVTMEAKKRGAAKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDQAALKYWGPSTHINFPLENYQTQLEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGSNAVTNFDISKYEVEKIMASNTLLSGDQARRIKQNVPRADVHEYNDTNVTSQNNGEADQARNSNESNDSKWKMVSNGCDQKNSAGNFKNSDFSMSLQDLVGLDDSTKIGTHFSNPSSLVTSLSSSREASPDKTAPSQLFPKPSMESKIGSSIGVTSSWFPSQVTTQMRPTSSINLSHFPVFAAWNDA* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1025 652 MobiDBLite consensus disorder prediction 509 534 - -
Psa5g1025 652 PRINTS Ethylene responsive element binding protein signature 314 325 IPR001471 GO:0003700|GO:0006355
Psa5g1025 652 PRINTS Ethylene responsive element binding protein signature 455 475 IPR001471 GO:0003700|GO:0006355
Psa5g1025 652 ProSiteProfiles AP2/ERF domain profile. 313 379 IPR001471 GO:0003700|GO:0006355
Psa5g1025 652 MobiDBLite consensus disorder prediction 501 534 - -
Psa5g1025 652 Gene3D AP2/ERF domain 312 381 IPR036955 GO:0003700|GO:0006355
Psa5g1025 652 Gene3D AP2/ERF domain 415 475 IPR036955 GO:0003700|GO:0006355
Psa5g1025 652 SMART rav1_2 415 479 IPR001471 GO:0003700|GO:0006355
Psa5g1025 652 SMART rav1_2 313 385 IPR001471 GO:0003700|GO:0006355
Psa5g1025 652 CDD AP2 312 379 IPR001471 GO:0003700|GO:0006355
Psa5g1025 652 SUPERFAMILY DNA-binding domain 312 381 IPR016177 GO:0003677
Psa5g1025 652 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 19 650 - -
Psa5g1025 652 CDD AP2 414 475 IPR001471 GO:0003700|GO:0006355
Psa5g1025 652 MobiDBLite consensus disorder prediction 584 611 - -
Psa5g1025 652 ProSiteProfiles AP2/ERF domain profile. 415 473 IPR001471 GO:0003700|GO:0006355
Psa5g1025 652 SUPERFAMILY DNA-binding domain 414 475 IPR016177 GO:0003677
Psa5g1025 652 Pfam AP2 domain 416 465 IPR001471 GO:0003700|GO:0006355
Psa5g1025 652 Pfam AP2 domain 313 371 IPR001471 GO:0003700|GO:0006355
Psa5g1025 652 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 19 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1025 Psa-Chr5 78531994 78535668 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1025 1 496 AP2-EREBP Transcription Factor Family AT4G37750 52.622 1.81e-162 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Psa5g1025 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1025 K09285 - gmx:100787223 792.341