Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1018 ATGGTGGCAACACCGTATGAAGAAAGTCGCCGGAAGAGAATGGAAGAGAATCGGAAGAGAATGGAGGCTCTCAATCTCACTCAGCTTTCTCAATCCCTTCACAAATCATCTTCTCCCATTTCGAAACCCTCGCCGTCGAAACCTCGCACCACCGAGAAGCAGCTTGTTGTTGTCAGAAGATCCGGCCGTGTCGCCAACCAGCCTGCTCCTGTTTACAAAGAAATTCTTATTGATCGCGTTATAATACCTAGAAGTAGAACTTCAAGTGGAGGTAGTTATGATAAGTACAGGGATTACTCGAAGCGTGTATATGCTTCCGATGAAGCTCGAGTGGAAGCATTGGACAAGGCGGAGAAGTTGCAGTCCGAATTAAACTCCCCGCATCCGTTTTTTATTAAGACAATGCTTCAATCTCATGTCACTGGTGGATTCTGGCTGGGTCTTCCAGTTCGTTTCTGCAAGAAAAATCTTCCAAAACGGGACGAAGTGATGACTTTGATTGATGAGGATGGAAATGAGTCTCCAGCTACATTTTTGGCTCAAAAAACAGGACTTAGCGCTGGATGGAGAGGTTTTGCTATTGCTCATAAACTTGCTGACGGGGACGCTTTAATTTTTGAATTAGTTAAACGCACTGCATTCAAGGTGTACATTATCAGAGTGAATGGTCCTTCATTCAGAGGGTAA 687 0.4469 MVATPYEESRRKRMEENRKRMEALNLTQLSQSLHKSSSPISKPSPSKPRTTEKQLVVVRRSGRVANQPAPVYKEILIDRVIIPRSRTSSGGSYDKYRDYSKRVYASDEARVEALDKAEKLQSELNSPHPFFIKTMLQSHVTGGFWLGLPVRFCKKNLPKRDEVMTLIDEDGNESPATFLAQKTGLSAGWRGFAIAHKLADGDALIFELVKRTAFKVYIIRVNGPSFRG* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1018 228 SUPERFAMILY DNA-binding pseudobarrel domain 124 222 IPR015300 -
Psa5g1018 228 Pfam B3 DNA binding domain 131 220 IPR003340 GO:0003677
Psa5g1018 228 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS03G0184500 3 223 - -
Psa5g1018 228 ProSiteProfiles B3 DNA-binding domain profile. 131 222 IPR003340 GO:0003677
Psa5g1018 228 MobiDBLite consensus disorder prediction 1 53 - -
Psa5g1018 228 CDD B3_DNA 129 220 IPR003340 GO:0003677
Psa5g1018 228 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 3 223 IPR044837 -
Psa5g1018 228 MobiDBLite consensus disorder prediction 1 22 - -
Psa5g1018 228 SMART B3_2 131 222 IPR003340 GO:0003677
Psa5g1018 228 MobiDBLite consensus disorder prediction 23 51 - -
Psa5g1018 228 Gene3D - 106 223 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1018 Psa-Chr5 77343736 77348489 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1018 6 222 B3 DNA Binding Superfamily AT3G19184 56.561 8.41e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa5g1018 B3 1.7e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1018 - - gmx:100797091 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1018 5 77343736 77348489 Psa5g1018 5 77343736 77348489 ECH