Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1017 ATGGCCAGACCACAACAGCGTTACCGCGGCGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATCCGCCACCCCATTCTAAAAACAAGAATCTGGCTCGGAACTTTCGAAACAGCCGAGGATGCCGCACGAGCCTACGACGAAGCAGCGAGACTAATGTGCGGAACAAGAGCAAGAACAAATTTCCCTTACAATCCAAACGTGTCTCAATCATCATCTTCCAAGCTTCTCTCAGCAACTTTAACTGCTAAACTCCACAGATGCTACATTGCTTCATTGCAAATCACTCGACCAGTATCTCATCAACAACAACCTCAGAGAGAATCTGCAGAATCTCTCACCATTTCCACAAACAATGTTCCTGTGAAAAACAGTGAGGAATCTGACACTCACACTACTATGAGACATGATGAAGAGGAGAAAAACTCAGAGGGAAATTGGGTTTTCAAGAAAGTTAAAGTTGAAAATTCTCAGCAATTTTTCAAGCCTCTTGAAGAAGATCACATTGAACAAATGATTGAGGAGTTGCTTCATTATGGATCAATTGAGCTTTGTTCTGTTATTCCACCACAGTCTCATTGA 585 0.4359 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNVSQSSSSKLLSATLTAKLHRCYIASLQITRPVSHQQQPQRESAESLTISTNNVPVKNSEESDTHTTMRHDEEEKNSEGNWVFKKVKVENSQQFFKPLEEDHIEQMIEELLHYGSIELCSVIPPQSH* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1017 194 MobiDBLite consensus disorder prediction 122 144 - -
Psa5g1017 194 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Psa5g1017 194 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Psa5g1017 194 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Psa5g1017 194 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Psa5g1017 194 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Psa5g1017 194 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Psa5g1017 194 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 189 - -
Psa5g1017 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE 1 189 - -
Psa5g1017 194 MobiDBLite consensus disorder prediction 129 144 - -
Psa5g1017 194 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Psa5g1017 194 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1017 Psa-Chr5 77288220 77289868 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1017 1 193 AP2-EREBP Transcription Factor Family AT5G25190 65.306 5.41e-83 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Psa5g1017 AP2 6.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1017 - - gmx:100804510 283.493