Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa5g1017 | ATGGCCAGACCACAACAGCGTTACCGCGGCGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATCCGCCACCCCATTCTAAAAACAAGAATCTGGCTCGGAACTTTCGAAACAGCCGAGGATGCCGCACGAGCCTACGACGAAGCAGCGAGACTAATGTGCGGAACAAGAGCAAGAACAAATTTCCCTTACAATCCAAACGTGTCTCAATCATCATCTTCCAAGCTTCTCTCAGCAACTTTAACTGCTAAACTCCACAGATGCTACATTGCTTCATTGCAAATCACTCGACCAGTATCTCATCAACAACAACCTCAGAGAGAATCTGCAGAATCTCTCACCATTTCCACAAACAATGTTCCTGTGAAAAACAGTGAGGAATCTGACACTCACACTACTATGAGACATGATGAAGAGGAGAAAAACTCAGAGGGAAATTGGGTTTTCAAGAAAGTTAAAGTTGAAAATTCTCAGCAATTTTTCAAGCCTCTTGAAGAAGATCACATTGAACAAATGATTGAGGAGTTGCTTCATTATGGATCAATTGAGCTTTGTTCTGTTATTCCACCACAGTCTCATTGA | 585 | 0.4359 | MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNVSQSSSSKLLSATLTAKLHRCYIASLQITRPVSHQQQPQRESAESLTISTNNVPVKNSEESDTHTTMRHDEEEKNSEGNWVFKKVKVENSQQFFKPLEEDHIEQMIEELLHYGSIELCSVIPPQSH* | 195 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa5g1017 | 194 | MobiDBLite | consensus disorder prediction | 122 | 144 | - | - | |
Psa5g1017 | 194 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 64 | IPR001471 | GO:0003700|GO:0006355 | |
Psa5g1017 | 194 | SUPERFAMILY | DNA-binding domain | 7 | 66 | IPR016177 | GO:0003677 | |
Psa5g1017 | 194 | CDD | AP2 | 6 | 66 | IPR001471 | GO:0003700|GO:0006355 | |
Psa5g1017 | 194 | Gene3D | AP2/ERF domain | 6 | 65 | IPR036955 | GO:0003700|GO:0006355 | |
Psa5g1017 | 194 | PRINTS | Ethylene responsive element binding protein signature | 8 | 19 | IPR001471 | GO:0003700|GO:0006355 | |
Psa5g1017 | 194 | PRINTS | Ethylene responsive element binding protein signature | 30 | 46 | IPR001471 | GO:0003700|GO:0006355 | |
Psa5g1017 | 194 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 1 | 189 | - | - | |
Psa5g1017 | 194 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE | 1 | 189 | - | - | |
Psa5g1017 | 194 | MobiDBLite | consensus disorder prediction | 129 | 144 | - | - | |
Psa5g1017 | 194 | Pfam | AP2 domain | 7 | 56 | IPR001471 | GO:0003700|GO:0006355 | |
Psa5g1017 | 194 | SMART | rav1_2 | 7 | 70 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa5g1017 | Psa-Chr5 | 77288220 | 77289868 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa5g1017 | 1 | 193 | AP2-EREBP Transcription Factor Family | AT5G25190 | 65.306 | 5.41e-83 | 242 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Psa5g1017 | AP2 | 6.4e-12 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa5g1017 | - | - | gmx:100804510 | 283.493 |